{"id":"nemo:col-myr9nn1","short_name":"zeng_10XMultiome_mouse_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot)","name":"Developing Mouse Brain Atlas: Multiome analysis of single nuclei from embryonic and postnatal mouse brain (BICAN-2026-01-RR-SCO MetaSnapshot)","description":"As part of the BRAIN Initiative Cell Atlas Network, single nuclei from mouse were assayed using the 10X Genomics Multiome platform. (BICAN-2026-01-RR-SCO MetaSnapshot)","data_citation":"Dataset: Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuan Gao, Jessica Gloe, Jeff Goldy, Junitta Guzman, Windy Ho, Katelyn James, Matthew Jungert, Madhav Kannan, Changkyu Lee, Ruiyang Liu, Rachel McCue, Beagan Nguy, Chelsea M Pagan, Trangthanh Pham, Elliot Phillips, Kimberly A. Smith, Emma D. Thomas, Michael Tieu, Amy Torkelson, Alex Tran, Cindy T. J. van Velthoven, Zizhen Yao, Hongkui Zeng, Paola Arlotta (2024) Developing Mouse: Multiome analysis of single nuclei from embryonic and postnatal mouse brain [Dataset]. Available from https://assets.nemoarchive.org/nemo:col-myr9nn1","keywords":["BICAN","Rapid Release","2026"],"funding_agency":"NIMH","grant_numbers":["U01MH130962"],"access":"open","license":null,"modalities":["multimodal"],"rrid":null,"assays":["multiome; chromatin","multiome; transcriptome"],"techniques":["10X genomics multiome;atac-seq","10X genomics multiome;rnaseq"],"anatomical_regions":[{"region_name":"Hindbrain","short_name":"HB","cv_term_id":"MBA:1065"},{"region_name":"Hippocampal formation","short_name":"HPF","cv_term_id":"MBA:1089"},{"region_name":"Isocortex","short_name":"Isocortex","cv_term_id":"MBA:315"},{"region_name":"Cerebellum","short_name":"CB","cv_term_id":"MBA:512"},{"region_name":"Hypothalamus","short_name":"HY","cv_term_id":"MBA:1097"},{"region_name":"Cerebral nuclei","short_name":"CNU","cv_term_id":"MBA:623"},{"region_name":"Medulla","short_name":"MY","cv_term_id":"MBA:354"},{"region_name":"Olfactory areas","short_name":"OLF","cv_term_id":"MBA:698"},{"region_name":"Midbrain","short_name":"MB","cv_term_id":"MBA:313"},{"region_name":"Thalamus","short_name":"TH","cv_term_id":"MBA:549"},{"region_name":"Cortical subplate","short_name":"CTXsp","cv_term_id":"MBA:703"}],"submission_status":null,"knowledge_base":null,"taxa":[{"name":"house mouse","cv_term_id":"NCBI:txid10090"}],"protocol_url":"https://dx.doi.org/10.17504/protocols.io.bp2l61mqrvqe/v1","programs":["bican"],"collection_attributes":{"name":"Creator","value":"Rapid Release Tool operator mschor"},"contact":null,"contributors":[],"manifest_file_urls":[{"url":"https://data.nemoarchive.org/bdbags/BICAN/BICAN-2026-01-RR-SCO/col-myr9nn1__BICAN__MetaSnapshot__2026-01-15__BICAN_Dev_Mouse__aibs__nuclei__10X_genomics_multiome__house_mouse__demultiplexed_fastq__open__no_restriction.tgz","protocol":"bdbag","type":"raw","file_count":21912,"size":86967425864944,"file_location":null,"readme":null}],"specimen_types":[],"collection_type":"Static","projects":["https://assets.nemoarchive.org/api/grant/nemo:prj-ggc1k9k"],"child_collections":["https://assets.nemoarchive.org/api/collection/nemo:col-0onu0di","https://assets.nemoarchive.org/api/collection/nemo:col-o29aa39"],"parent_collections":["https://assets.nemoarchive.org/api/collection/nemo:col-iefmnby","https://assets.nemoarchive.org/api/collection/nemo:col-ow59b0f"]}