Identifier Results
| Field | Value |
|---|---|
| Identifier | nemo:col-dj2jtk5 |
| Short Name | lein_10XMultiome_human_nuclei |
| Title | Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain |
| Description | As part of the BRAIN Initiative Cell Atlas Network, single nuclei from humans were assayed using the 10X Genomics Multiome platform. Licensed under BICAN BY NR. Dataset: Trygve Bakken, Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuanyuan Fu, Aaron Garcia, Jessica Gloe, Jeff Goldy, Junitta Guzman, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Nelson Johansen, Danielle L. Jones, Kathryn Jordan, Matthew Jungert, Madhav Kannan, Inkar Kapen, Lauren Kruse, Changkye Lee, Boaz P. Levi, Rachel McCue, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Elliot Phillips, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Alex Tran, Jingyi Xie, Zizhen Yao, Dan Yuan, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain [Dataset]. Available from: https://assets.nemoarchive.org/col-dj2jtk5. |
| Keywords | NA |
| Access | open |
| License | BICAN-BY-NR |
| Modality | multimodal |
| Assay | multiome; transcriptome, multiome; chromatin |
| Technique | 10X genomics multiome;rnaseq, 10X genomics multiome;atac-seq |
| Brain Region | pons, basal nuclei (basal ganglia), midbrain (mesencephalon), myelencephalon (medulla oblongata), paleocortex (semicortex), hypothalamus, thalamus |
| Sub-Specimen | nuclei |
| BICCN Knowledgebase URL | NA |
| aka | NA |
| Submission Status | in progress |
| Species | human |
| NCBI Species Taxon ID | NCBI:txid9606 |
| Contact ORCID | 0000-0002-3142-1970 |
| Protocol URL | https://dx.doi.org/10.17504/protocols.io.bp2l61mqrvqe/v1 |
| HTTPS URL | https://data.nemoarchive.org/bican/grant/HMBA/lein/multimodal/sncell/ |
| BDBag URL | https://data.nemoarchive.org/publication_release/BICAN/UM1MH130981/aibs/BICAN_lein_10XMultiome_human_nuclei-col-dj2jtk5-2024-09-20.tgz |
| Total Size in Collection (in GB) | 40078.6 |
| Total Files in Collection | 12098 |
| Authors | Trygve Bakken, Darren Bertagnolli, Anish Bhaswanth Chakka, Rushil Chakrabarty, Nick Dee, Rebecca Ferrer, Aaron Garcia, Jeff Goldy, Junitta Guzman, Madeleine Hewitt, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Danielle L. Jones, Lauren Kruse, Boaz P. Levi, Brian Long, Delissa McMillen, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Jessie Puckett, Matthew Schmitz, Stephanie Seeman, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Jack Waters, Morgan Wirthlin, Hongkui Zeng, Ed Lein |
| Organization | Allen Institute for Brain Science |
| Contact Person | Kimberly Smith |
| Grant Name | UM1MH130981 |
| Project Name | BICAN HMBA |
| Citation | Trygve Bakken, Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuanyuan Fu, Aaron Garcia, Jessica Gloe, Jeff Goldy, Junitta Guzman, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Nelson Johansen, Danielle L. Jones, Kathryn Jordan, Matthew Jungert, Madhav Kannan, Inkar Kapen, Lauren Kruse, Changkye Lee, Boaz P. Levi, Rachel McCue, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Elliot Phillips, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Alex Tran, Jingyi Xie, Zizhen Yao, Dan Yuan, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain [Dataset]. Available from: https://assets.nemoarchive.org/col-dj2jtk5 |
This identifier does not have sub-identifiers with "raw" data associated
This identifier does not have sub-identifiers with "analysis" data associated