Identifier Results
| Field | Value |
|---|---|
| Identifier | nemo:col-npe62xg |
| Short Name | mccarroll_10Xv3.1_human_nuclei |
| Title | Population variability: Single nucleus RNAseq from postnatal human brain |
| Description | As part of the BRAIN Initiative Cell Atlas Network, single nuclei from humans were assayed using 10X chromium 3' v3.1 sequencing. Licensed under BICAN BY NR. Dataset: Kathleen Kim, Lauren Macaisa, Sadie Drouin, Nirmala Rayan, Curtis Mello, Nafiseh Yavari, Olivia Yoo, Alec Wysoker, Khalid Shakir, Jim Nemesh, Seva Kashin, Melissa Goldman, Giulio Genovese, Haley Fritch, Marina Hogan, Katelyn Flowers, Emily Finn, Chuck Vanderburg, Kiku Ichihara, Evan Macosko, Steve McCarroll (2024) Population variability: Single nucleus RNAseq from postnatal human brain [Dataset]. Available from: https://assets.nemoarchive.org/col-npe62xg. |
| Keywords | NA |
| Access | open |
| License | BICAN-BY-NR |
| Modality | transcriptome |
| Assay | transcriptome |
| Technique | 10x chromium 3' v3.1 sequencing |
| Brain Region | Basic cell groups and regions, Isocortex |
| Sub-Specimen | nuclei |
| BICCN Knowledgebase URL | NA |
| aka | NA |
| Submission Status | in progress |
| Species | human |
| NCBI Species Taxon ID | NCBI:txid9606 |
| Contact ORCID | 0009-0005-8402-9672 |
| Protocol URL | https://assets.ctfassets.net/an68im79xiti/1eX2FPdpeCgnCJtw4fj9Hx/7cb84edaa9eca04b607f9193162994de/CG000204_ChromiumNextGEMSingleCell3_v3.1_Rev_D.pdf;https://dx.doi.org/10.17504/protocols.io.4r3l2qbwql1y/v1;https://dx.doi.org/10.17504/protocols.io.36wgq3bmxlk5/v1 |
| HTTPS URL | https://data.nemoarchive.org/bican/grant/BICAN_PN_Human_Var/mccarroll/transcriptome/sncell/10x_v3.1/human/raw/ |
| BDBag URL | https://data.nemoarchive.org/publication_release/BICAN/UM1MH130966/broad_mccarroll/BICAN_mccarroll_10Xv3.1_human_nuclei-col-npe62xg-09-20-2024.tgz |
| Total Size in Collection (in GB) | 2642.0 |
| Total Files in Collection | 1025 |
| Authors | Kathleen Kim, Lauren Macaisa, Sadie Drouin, Nirmala Rayan, Curtis Mello, Nafiseh Yavari, Olivia Yoo, Alec Wysoker, Khalid Shakir, Jim Nemesh, Seva Kashin, Melissa Goldman, Giulio Genovese, Haley Fritch, Marina Hogan, Katelyn Flowers, Emily Finn, Chuck Vanderburg, Kiku Ichihara, Evan Macosko, Steve McCarroll |
| Organization | Broad Institute |
| Contact Person | Melissa Goldman |
| Grant Name | UM1MH130966 |
| Project Name | BICAN Postnatal Human Variation |
| Citation | Kathleen Kim, Lauren Macaisa, Sadie Drouin, Nirmala Rayan, Curtis Mello, Nafiseh Yavari, Olivia Yoo, Alec Wysoker, Khalid Shakir, Jim Nemesh, Seva Kashin, Melissa Goldman, Giulio Genovese, Haley Fritch, Marina Hogan, Katelyn Flowers, Emily Finn, Chuck Vanderburg, Kiku Ichihara, Evan Macosko, Steve McCarroll (2024) Population variability: Single nucleus RNAseq from postnatal human brain [Dataset]. Available from: https://assets.nemoarchive.org/col-npe62xg |
This identifier does not have sub-identifiers with "raw" data associated
This identifier does not have sub-identifiers with "analysis" data associated