NeMO Identifier: Collection

NeMO ID: nemo:col-2j1kset

  • Collection Name: Chromatin accessibility profiling of genomic DNA in individual mouse brain cell nuclei
  • Short Name: ecker_sn_ATACseq
  • Programs: biccn

COLLECTION METADATA

  • Description:

  • Single nucleus ATACseq chromatin accessibility data.

  • Collection Type: Dynamic
  • Taxa: house mouse
  • Assays: chromatin
  • Anatomical Regions:
  • Modalities: epigenome
  • Techniques: atac-seq
  • Specimen Type: cell nucleus
  • Keywords: house mouse , ATACseq , epigenome , biccn
  • Contact:
  • Grant Numbers: 1U19MH114831
  • Funding Agency: NIMH
  • URL Protocol: Protocol

Contributors

Name Organization ORCID
Joseph Ecker Salk Institute for Biological Studies 0000-0001-5799-5895
Yang Li University of California, San Diego
Eran Mukamel University of California, San Diego 0000-0003-3203-9535
Sebastian Preissl University of California, San Diego 0000-0001-8971-5616
Bing Ren University of California, San Diego 0000-0002-5435-1127

Project(s) this Collection Belongs To

ID Title
nemo:grn-x93fkfn Center for Epigenomics of the Mouse Brain Atlas

Access Raw Data

Total Files Total Size (GB) Protocol Submission Status
265 0.00 Browse HTTP Server Ongoing

Access Processed Data

Total Files Total Size (GB) Protocol Submission Status
1039 0.00 Browse HTTP Server Ongoing

Documentation

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473