NeMO Identifier: Collection

NeMO ID: nemo:col-vakx64k

  • Collection Name: Single-Cell ATAC-seq of the Developing Human Brain
  • Short Name: kriegstein_sc_ATACseq
  • Programs: biccn

COLLECTION METADATA

  • Description:

  • "Chromatin accessibility of >75,000 cells from eight distinct areas of developing human forebrain using single cell ATAC-seq (scATACseq)."

  • Collection Type: Dynamic
  • Taxa: human
  • Assays: chromatin
  • Anatomical Regions:
  • Modalities: epigenome
  • Techniques: atac-seq
  • Specimen Type: cell nucleus
  • Keywords: human , ATACseq , epigenome , biccn
  • Contact:
  • Grant Numbers: 1U01MH114825
  • Funding Agency: NIMH
  • URL Protocol: Protocol

Contributors

Name Organization ORCID
Arnold Kriegstein University of California, San Francisco 0000-0001-5742-2990
Tomasz Nowakowski University of California, San Francisco 0000-0003-2345-4964
Li Wang University of California, San Francisco
Ryan Ziffra University of California, San Francisco

Project(s) this Collection Belongs To

ID Title
nemo:grn-qwzp05p A Cellular resolution census of the developing human brain

Documentation

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473