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NeMO Identifier: Collection
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NeMO ID: nemo:dat-gnot1gb
Collection Name:
Single Cell Epigenomic Atlas of the Developing Human Cortex
Short Name:
Programs:
biccn
COLLECTION METADATA
Description:
"To characterize the chromatin state landscape of the developing human brain at single cell resolution, we performed scATAC-seq on primary samples of ...
"To characterize the chromatin state landscape of the developing human brain at single cell resolution, we performed scATAC-seq on primary samples of the human forebrain at mid-gestation (n = 6 individuals), including samples of dorsolateral prefrontal cortex (PFC), primary visual cortex (V1), primary motor cortex (M1), primary somatosensory cortex, dorso-lateral parietal cortex, temporal cortex, insular cortex, and the medial ganglionic eminence (MGE). In addition, we generated scATAC-seq data from cortical organoids derived via directed differentiation from three genetically normal individuals (13234, H-28126, H1) at three time points of differentiation."
Collection Type:
Static
Taxa:
human
Assays:
Anatomical Regions:
Modalities:
epigenome
Techniques:
atac-seq
Specimen Type:
Keywords:
Contact:
Tomasz Nowakowski
Grant Numbers:
Funding Agency:
URL Protocol:
Data Access:
restricted
Data License:
CC BY 4.0
Data associated with this Publication
DOI
Year
PubMed ID
Journal
Vol:Page
DOI
PMID: 34616060
Contributors
Name
Organization
ORCID
Tomasz Nowakowski
University of California, San Francisco
0000-0003-2345-4964
Project(s) this Collection Belongs To
ID
Title
nemo:std-y936g22
Single-Cell ATAC-seq of the Developing Human Brain
Child Collections
Collection ID
Name
Type
Short Name
Submission Status
nemo:dat-dgarbc3
Single Cell Epigenomic Atlas of the Developing Human Cortex: Analysis
files
kriegstein_sc_ATACseq_Analysis
nemo:dat-pi33nqw
Single Cell Epigenomic Atlas of the Developing Human Cortex: Raw data
files
kriegstein_sc_ATACseq_Raw
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Citation for NeMO
Data Citation:
Dataset: Tomasz Nowakowski, Ryan Ziffra, Seth Ament (2022) Single Cell Epigenomic Atlas of the Developing Human Cortex [Dataset]. Available from
https://assets.nemoarchive.org/dat-gnot1gb