NeMO Identifier: Collection

NeMO ID: nemo:dat-ch1nqb7

  • Collection Name: A transcriptomic and epigenomic cell atlas of mouse primary motor cortex
  • Short Name:
  • Programs: biccn

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: house mouse
  • Assays:
  • Anatomical Regions:
  • Modalities: transcriptome , epigenome , multimodal
  • Techniques: 10x chromium 3' v2 sequencing , 10x chromium 3' v3 sequencing , atac-seq , mc-seq2 , smart-seq v4
  • Specimen Type:
  • Keywords:
  • Contact: Eran Mukamel
  • Grant Numbers:
  • Funding Agency:
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page
DOI PMID: 34616066

Contributors

Name Organization ORCID
Eran Mukamel University of California, San Diego 0000-0003-3203-9535

Project(s) this Collection Belongs To

ID Title
nemo:std-5jvcwm1 DNA methylation profiling of genomic DNA in individual mouse brain cell nuclei (RS1.1)

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:dat-82b26ty Processed data for DNA methylation dataset from the Salk Institute files BICCN_MOp_DNA_methylation_Analysis_Salk
nemo:dat-cb5kiub Raw data for DNA methylation dataset from the Salk Institute files BICCN_MOp_DNA_methylation_Salk
nemo:dat-3k8aaar Raw data for scRNA_10X_v2 dataset from the Allen Institute files BICCN_MOp_scRNA_10X_v2_AIBS
nemo:dat-4n3nd9i Processed data for scRNA_10_v2 dataset from the Allen Institute files BICCN_MOp_scRNA_10X_v2_Analysis_AIBS
nemo:dat-n9ap8cz Raw data for scRNA_10X_v3 dataset from the Allen Institute files BICCN_MOp_scRNA_10X_v3_AIBS
nemo:dat-oxuqvjw Processed data for scRNA_10X_v3 dataset from the Allen Institute files BICCN_MOp_scRNA_10X_v3_Analysis_AIBS
nemo:dat-oijbtmc Raw data for scRNA_SMART dataset from the Allen Institute files BICCN_MOp_scRNA_SMART_AIBS
nemo:dat-k7p82j4 Processed data for scRNA_SMARTseq dataset from the Allen Institute files BICCN_MOp_scRNA_SMART_Analysis_AIBS
nemo:dat-15ao5au Processed data for Open chromatin ATAC dataset from the Salk Institute files BICCN_MOp_snATAC_Analysis_Salk
nemo:dat-n5ivyeg Raw data for Open chromatin ATAC dataset from the Salk Institute files BICCN_MOp_snATAC_Salk
nemo:dat-a6qizv0 Raw data for snRNA_10X_v2 dataset from the Allen Institute files BICCN_MOp_snRNA_10X_v2_AIBS
nemo:dat-pi7zkyi Processed data for snRNA_10X_v2 dataset from the Allen Institute files BICCN_MOp_snRNA_10X_v2_Analysis_AIBS
nemo:dat-sv5oe57 Raw data for snRNA_10X_v3 dataset from the Allen Institute files BICCN_MOp_snRNA_10X_v3_AIBS
nemo:dat-1xp2hje Processed data for snRNA_10_v3 dataset from the Allen Institute files BICCN_MOp_snRNA_10X_v3_Analysis_AIBS
nemo:dat-44czbgu Processed data for snRNA_10_v3 dataset from the Broad Institute files BICCN_MOp_snRNA_10X_v3_Analysis_Broad
nemo:dat-j3xxa7z Raw data for snRNA_10_v3 dataset from the Broad Institute files BICCN_MOp_snRNA_10X_v3_Broad
nemo:dat-t9e8c9u Raw data for snRNA_SMART dataset from the Allen Institute files BICCN_MOp_snRNA_SMART_AIBS
nemo:dat-55mowp9 Processed data for snRNA_SMARTseq dataset from the Allen Institute files BICCN_MOp_snRNA_SMART_Analysis_AIBS

Documentation

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473