NeMO Identifier: Collection

NeMO ID: nemo:dat-ch1nqb7

  • Collection Name: A transcriptomic and epigenomic cell atlas of mouse primary motor cortex
  • Short Name:
  • Programs: biccn

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: house mouse
  • Assays:
  • Anatomical Regions:
  • Modalities: transcriptome , epigenome , multimodal
  • Techniques: 10x chromium 3' v2 sequencing , 10x chromium 3' v3 sequencing , atac-seq , mc-seq2 , smart-seq v4
  • Specimen Type:
  • Keywords:
  • Contact: Eran Mukamel
  • Grant Numbers:
  • Funding Agency:
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page
DOI PMID: 34616066

Contributors

Name Organization ORCID
Eran Mukamel University of California, San Diego 0000-0003-3203-9535

Project(s) this Collection Belongs To

ID Title
nemo:std-5jvcwm1 DNA methylation profiling of genomic DNA in individual mouse brain cell nuclei (RS1.1)

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:dat-82b26ty Processed data for DNA methylation dataset from the Salk Institute files BICCN_MOp_DNA_methylation_Analysis_Salk
nemo:dat-cb5kiub Raw data for DNA methylation dataset from the Salk Institute files BICCN_MOp_DNA_methylation_Salk
nemo:dat-3k8aaar Raw data for scRNA_10X_v2 dataset from the Allen Institute files BICCN_MOp_scRNA_10X_v2_AIBS
nemo:dat-4n3nd9i Processed data for scRNA_10_v2 dataset from the Allen Institute files BICCN_MOp_scRNA_10X_v2_Analysis_AIBS
nemo:dat-n9ap8cz Raw data for scRNA_10X_v3 dataset from the Allen Institute files BICCN_MOp_scRNA_10X_v3_AIBS
nemo:dat-oxuqvjw Processed data for scRNA_10X_v3 dataset from the Allen Institute files BICCN_MOp_scRNA_10X_v3_Analysis_AIBS
nemo:dat-oijbtmc Raw data for scRNA_SMART dataset from the Allen Institute files BICCN_MOp_scRNA_SMART_AIBS
nemo:dat-k7p82j4 Processed data for scRNA_SMARTseq dataset from the Allen Institute files BICCN_MOp_scRNA_SMART_Analysis_AIBS
nemo:dat-15ao5au Processed data for Open chromatin ATAC dataset from the Salk Institute files BICCN_MOp_snATAC_Analysis_Salk
nemo:dat-n5ivyeg Raw data for Open chromatin ATAC dataset from the Salk Institute files BICCN_MOp_snATAC_Salk
nemo:dat-a6qizv0 Raw data for snRNA_10X_v2 dataset from the Allen Institute files BICCN_MOp_snRNA_10X_v2_AIBS
nemo:dat-pi7zkyi Processed data for snRNA_10X_v2 dataset from the Allen Institute files BICCN_MOp_snRNA_10X_v2_Analysis_AIBS
nemo:dat-sv5oe57 Raw data for snRNA_10X_v3 dataset from the Allen Institute files BICCN_MOp_snRNA_10X_v3_AIBS
nemo:dat-1xp2hje Processed data for snRNA_10_v3 dataset from the Allen Institute files BICCN_MOp_snRNA_10X_v3_Analysis_AIBS
nemo:dat-44czbgu Processed data for snRNA_10_v3 dataset from the Broad Institute files BICCN_MOp_snRNA_10X_v3_Analysis_Broad
nemo:dat-j3xxa7z Raw data for snRNA_10_v3 dataset from the Broad Institute files BICCN_MOp_snRNA_10X_v3_Broad
nemo:dat-t9e8c9u Raw data for snRNA_SMART dataset from the Allen Institute files BICCN_MOp_snRNA_SMART_AIBS
nemo:dat-55mowp9 Processed data for snRNA_SMARTseq dataset from the Allen Institute files BICCN_MOp_snRNA_SMART_Analysis_AIBS

Documentation