NeMO Identifier: Collection

NeMO ID: nemo:dat-ek5dbmu

  • Collection Name: "Comparative cellular analysis of motor cortex in human, marmoset and mouse"
  • Short Name:
  • Programs: biccn

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: human
  • Assays:
  • Anatomical Regions:
  • Modalities: transcriptome , epigenome , multimodal
  • Techniques: 10x chromium 3' v3 sequencing , atac-seq , mc-seq2 , smart-seq v4 , snare-seq2;atac-seq , snare-seq2;rnaseq
  • Specimen Type:
  • Keywords: snmC-seq2 , snRNA-seq , 10x , SSv4 , SNARE-seq2 , DNA methylation , RNA-sequencing , ATAC-seq , human , macaque , marmoset , mouse , brain , primary motor cortex , M1 , Mop
  • Contact: Trygve Bakken
  • Grant Numbers:
  • Funding Agency:
  • URL Protocol:
  • Data Access: restricted
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page
DOI PMID: 34616062

Contributors

Name Organization ORCID
Trygve Bakken Allen Institute 0000-0003-3373-7386

Project(s) this Collection Belongs To

ID Title
nemo:std-0g9mnpc Chromatin accessibility data from mouse V1

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:dat-a8at9ih "Comparative cellular analysis of motor cortex in human, marmoset and mouse: Analysis" files M1_study_Analysis
nemo:dat-bx7hnbd "Comparative cellular analysis of motor cortex in human, marmoset and mouse: Raw_human_10X data" files M1_study_Raw_human_10X
nemo:dat-9arp1vk "Comparative cellular analysis of motor cortex in human, marmoset and mouse: Raw_human_mCseq data" files M1_study_Raw_human_mCseq
nemo:dat-wosa3hn "Comparative cellular analysis of motor cortex in human, marmoset and mouse: Raw_human_SNAREseq data" files M1_study_Raw_human_SNAREseq
nemo:dat-mhvbd8b "Comparative cellular analysis of motor cortex in human, marmoset and mouse: Raw_human_SS4 data" files M1_study_Raw_human_SS4
nemo:dat-cg2cf8j "Comparative cellular analysis of motor cortex in human, marmoset and mouse: Raw_marmoset_10X data" files M1_study_Raw_marmoset_10X
nemo:dat-u3ajbhg "Comparative cellular analysis of motor cortex in human, marmoset and mouse: Raw_marmoset_mCseq data" files M1_study_Raw_marmoset_mCseq
nemo:dat-2mwt2hg "Comparative cellular analysis of motor cortex in human, marmoset and mouse: Raw_marmoset_SNAREseq" files M1_study_Raw_marmoset_SNAREseq
nemo:dat-gf9tvdo "Comparative cellular analysis of motor cortex in human, marmoset and mouse: Raw_mouse_10X data" files M1_study_Raw_mouse_10X
nemo:dat-f1g21to "Comparative cellular analysis of motor cortex in human, marmoset and mouse: Raw_mouse_ATACseq data" files M1_study_Raw_mouse_ATACseq
nemo:dat-rbod44r "Comparative cellular analysis of motor cortex in human, marmoset and mouse: Raw_mouse_mCseq" files

Documentation

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473