NeMO Identifier: Collection

NeMO ID: nemo:dat-jb2f34y

  • Collection Name: A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation
  • Short Name:
  • Programs: biccn

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: house mouse
  • Assays:
  • Anatomical Regions:
  • Modalities: transcriptome
  • Techniques: 10x chromium 3' v2 sequencing , Patch_seq_SMARTseq_v4
  • Specimen Type:
  • Keywords:
  • Contact: Hongkui Zeng
  • Grant Numbers:
  • Funding Agency:
  • URL Protocol:
  • Data Access: open

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page
DOI PMID: 34004146

Contributors

Name Organization ORCID
Hongkui Zeng Allen Institute 0000-0002-0326-5878

Project(s) this Collection Belongs To

ID Title
nemo:std-k8xgfw7 Transcriptomic cell types in the mouse brain: SMART-seq cells

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:dat-v8hcynz A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation: 10X_Analysis files Zeng_Transcriptomic_Cortex_Hippocampus_10X_Analysis
nemo:dat-swf6xv3 A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation: 10X_Raw data files Zeng_Transcriptomic_Cortex_Hippocampus_10X_Raw
nemo:dat-iye7gkp A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation: SMARTer_Analysis files Zeng_Transcriptomic_Cortex_Hippocampus_SMARTer_Analysis
nemo:dat-v39m5v1 A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation: SMARTer_Raw data files Zeng_Transcriptomic_Cortex_Hippocampus_SMARTer_Raw

Documentation

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473