Identifier Results
| Field | Value |
|---|---|
| Identifier | nemo:dat-net1412 |
| Dataset Name | Comparative transcriptomics reveals human-specific cortical features |
| Version | NA |
| Release Date | NA |
| DOI | NA |
| Source Data URL | NA |
| Dataset Collection URL | https://data.nemoarchive.org/publication_release/Great_Ape_MTG.tgz |
| Description | Humans share a common cortical architecture with our closest primate relatives, and remodeled expression of connectivity and signaling pathways among neuronal and glial cell types is linked to human-specific genomic changes. |
| Keywords | NA |
| Total Files in Collection | 160885 |
| Total Size in Collection (in GB) | 26398.5 |
| Authors | Nikolas L. Jorstad, Janet H.T. Song, David Exposito-Alonso, Hamsini Suresh, Nathan Castro, Fenna M. Krienen, Anna Marie Yanny, Jennie Close, Emily Gelfand, Kyle J. Travaglini, Soumyadeep Basu, Marc Beaudin, Darren Bertagnolli, Megan Crow, Song-Lin Ding, Jeroen Eggermont, Alexandra Glandon, Jeff Goldy, Thomas Kroes, Brian Long, Delissa McMillen, Trangthanh Pham, Christine Rimorin, Kimberly Siletti, Saroja Somasundaram, Michael Tieu, Amy Torkelson, Katelyn Ward, Guoping Feng, William D. Hopkins, Thomas Hollt, C. Dirk Keene, Sten Linnarsson, Steven A. McCarroll, Boudewijn P. Lelieveldt, Chet C. Sherwood, Kimberly Smith, Christopher A. Walsh, Alexander Dobin, Jesse Gillis, Ed S. Lein, Rebecca D. Hodge, Trygve E. Bakken |
| Organization | Allen Institute for Brain Science |
| Contact Person | Trygve E. Bakken, Rebecca D. Hodge, Ed S. Lein |
| Contact E-Mail | trygveb@alleninstitute.org, rebeccah@alleninstitute.org, edl@alleninstitute.org |
| External Identifier | NA |
| Grant Name | U01MH114812 |
| Consortium | BICCN |
| Data Repository | NeMO |
| Data Repository RRID | RRID:SCR_016152 |
| Data License | NA |
| Data Access | https://biccn.org/terms-of-use |
| Community Standards | https://biccn.org/standards |
| Study Organism | human, chimpanzee, gorilla, rhesus macaque, common marmoset |
| Protocol ID | NA |
| Field | Value |
|---|---|
| Identifier | nemo:dat-0acxhue |
| Description | Raw SSv4 data from chimpanzee, generated by the Lein lab, associated with the following publication: Jorstad et al, 2022. Comparative transcriptomics reveals human-specific cortical features. bioRxiv doi.org/10.1101/2022.09.19.508480 |
| Source Data URL | https://data.nemoarchive.org/biccn/grant/u01_lein/lein/transcriptome/sncell/10x_v3/chimpanzee/raw/ |
| Field | Value |
|---|---|
| Identifier | nemo:dat-7p6upfv |
| Description | Raw 10x data from western gorilla, generated by the Lein lab, associated with the following publication: Jorstad et al, 2022. Comparative transcriptomics reveals human-specific cortical features. bioRxiv doi.org/10.1101/2022.09.19.508480 |
| Source Data URL | https://data.nemoarchive.org/biccn/grant/u01_lein/lein/transcriptome/sncell/10x_v3/western_gorilla/raw/ |
| Field | Value |
|---|---|
| Identifier | nemo:dat-9zhjid4 |
| Description | Raw SSv4 data from gorilla, generated by the Lein lab, associated with the following publication: Jorstad et al, 2022. Comparative transcriptomics reveals human-specific cortical features. bioRxiv doi.org/10.1101/2022.09.19.508480 |
| Source Data URL | https://data.nemoarchive.org/biccn/grant/u01_lein/lein/transcriptome/sncell/SSv4/western_gorilla/raw/ |
| Field | Value |
|---|---|
| Identifier | nemo:dat-d72459a |
| Description | Open, raw 10x data from the Middle Temporal Gyrus (MTG) of humans, generated by the Lein lab, associated with the following publication: Jorstad et al, 2022. Comparative transcriptomics reveals human-specific cortical features. bioRxiv doi.org/10.1101/2022.09.19.508480 |
| Source Data URL | https://data.nemoarchive.org/biccn/grant/u01_lein/lein/transcriptome/sncell/10x_v3/human/raw/ |
| Field | Value |
|---|---|
| Identifier | nemo:dat-f2gxte0 |
| Description | Controlled, raw SSv4 data from Middle Temporal Gyrus (MTG) of humans, generated by the Lein lab, associated with the following publication: Jorstad et al, 2022. Comparative transcriptomics reveals human-specific cortical features. bioRxiv doi.org/10.1101/2022.09.19.508480 . This dataset is included within NDA Permissions Group 'BRAIN/NeMO: A multimodal atlas of human brain cell types: Human Cortex, BRAIN/NeMO: A multimodal atlas of human brain cell types: Middle Temporal Gyrus (MTG)'. |
| Source Data URL | None |
| Field | Value |
|---|---|
| Identifier | nemo:dat-hz4h3vw |
| Description | Raw 10x data from microdissected Layer 5 (L5) region of Middle Temporal Gyrus (MTG) of humans, generated by the Lein lab, associated with the following publication: Jorstad et al, 2022. Comparative transcriptomics reveals human-specific cortical features. bioRxiv doi.org/10.1101/2022.09.19.508480 |
| Source Data URL | This is a restricted access dataset. Instructions for controlled access are available at https://nemoarchive.org/resources/accessing-controlled-access-data.php |
| Field | Value |
|---|---|
| Identifier | nemo:dat-kjmvk2g |
| Description | Raw 10x data from rhesus macaque, associated with the following publication: Jorstad et al, 2022. Comparative transcriptomics reveals human-specific cortical features. bioRxiv doi.org/10.1101/2022.09.19.508480 |
| Source Data URL | https://data.nemoarchive.org/biccn/grant/u01_lein/lein/transcriptome/sncell/10x_v3/rhesus_macaque/raw/ |
| Field | Value |
|---|---|
| Identifier | nemo:dat-ub4jp6b |
| Description | Raw 10x data from chimpanzee, generated by the Lein lab, associated with the following publication: Jorstad et al, 2022. Comparative transcriptomics reveals human-specific cortical features. bioRxiv doi.org/10.1101/2022.09.19.508480 |
| Source Data URL | https://data.nemoarchive.org/biccn/grant/u01_lein/lein/transcriptome/sncell/10x_v3/chimpanzee/raw/ |
| Field | Value |
|---|---|
| Identifier | nemo:dat-x1p13m8 |
| Description | Raw 10x data from marmoset, generated by the McCarroll lab,associated with the following publication: Jorstad et al, 2022. Comparative transcriptomics reveals human-specific cortical features. bioRxiv doi.org/10.1101/2022.09.19.508480 |
| Source Data URL | https://data.nemoarchive.org/biccn/grant/u01_feng/mccarroll/transcriptome/sncell/10Xv3/marmoset/raw/ |
| Field | Value |
|---|---|
| Identifier | nemo:dat-6c0uvnd |
| Description | Analysis associated with the following publication: Jorstad et al, 2022. Comparative transcriptomics reveals human-specific cortical features. bioRxiv doi.org/10.1101/2022.09.19.508480 |
| Source Data URL | https://data.nemoarchive.org/publication_release/Great_Ape_MTG_Analysis/ |
| Field | Value |
|---|---|
| Identifier | nemo:dat-ty2vwov |
| Description | Controlled, processed SSv4 data from Middle Temporal Gyrus (MTG) of humans, generated by the Lein lab, associated with the following publication: Jorstad et al, 2022. Comparative transcriptomics reveals human-specific cortical features. bioRxiv doi.org/10.1101/2022.09.19.508480. This dataset is included within NDA Permissions Group 'BRAIN/NeMO: A multimodal atlas of human brain cell types: Human Cortex, BRAIN/NeMO: A multimodal atlas of human brain cell types: Middle Temporal Gyrus (MTG)'. |
| Source Data URL | None |