NeMO Identifier: Collection

NeMO ID: nemo:dat-qg7n1b0

  • Collection Name: A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
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COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: house mouse
  • Assays:
  • Anatomical Regions:
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  • Keywords: whole brain , single cell RNA-Seq , transcriptome , mouse
  • Contact: Zizhen Yao
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  • Data Access: open
  • Data License: CC BY 4.0

Contributors

Name Organization ORCID
Zizhen Yao Allen Institute 0000-0002-9361-5607

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:dat-z9ahop6 A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain: 10x_v2_Raw data files Zeng_transcriptome_Allen_10x_cells_wholebrain_2023_10x_v2_Raw
nemo:dat-14pqb9m A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain: 10x_v3_Raw data files Zeng_transcriptome_Allen_10x_cells_wholebrain_2023_10x_v3_Raw
nemo:dat-yqebkr6 A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain: Analysis files Zeng_transcriptome_Allen_10x_cells_wholebrain_2023_Analysis

Documentation


Data Citation:

10X Dataset: Hongkui Zeng, Zizhen Yao, Cindy van Velthoven, Kimberly A. Smith, Bosiljka Tasic, Changkyu Lee, Jeff Goldy, Anish Bhaswanth Chakka, Thuc Nghi Nguyen, Michael Tieu, Nick Dee,Junitta Guzman, Trangthanh Pham, Amy Torkelson, Rushil Chakrabarty, Tim Dolbeare, Nathan Guilford (2023). Whole Mouse Brain Transcriptomic Cell Type Atlas - 10x scRNAseq whole brain. [Dataset] Available from https://assets.nemoarchive.org/dat-qg7n1b0

NeMO Citation:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473