Identifier Results
| Field | Value |
|---|---|
| Identifier | nemo:dat-yqebkr6 |
| Dataset Name | A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain |
| Version | NA |
| Release Date | NA |
| DOI | NA |
| Source Data URL | https://data.nemoarchive.org/other/grant/aibs_internal/zeng/transcriptome/scell/10x_v3/mouse/processed/counts/ |
| Dataset Collection URL | https://data.nemoarchive.org/publication_release/Zeng_transcriptome_Allen_10x_cells_wholebrain_2023/Analysis_bag_1_Zeng_transcriptome_Allen_10x_cells_wholebrain_2023_Analysis.tgz |
| Description | Processed data associated with the following publication: Yao et al, 2023. A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain. bioRxiv doi.org/10.1101/2023.03.06.531121 |
| Keywords | whole brain, single cell RNA-Seq, transcriptome, mouse |
| Total Files in Collection | 48 |
| Total Size in Collection (in GB) | 280.7 |
| Authors | Zizhen Yao, Cindy T. J. van Velthoven, Michael Kunst, Meng Zhang, Delissa McMillen, Changkyu Lee, Won Jung, Jeff Goldy, Aliya Abdelhak, Pamela Baker, Eliza Barkan, Darren Bertagnolli, Jazmin Campos, Daniel Carey, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Sakshi Chavan, Min Chen, Michael Clark, Jennie Close, Kirsten Crichton, Scott Daniel, Tim Dolbeare, Lauren Ellingwood, James Gee, Alexandra Glandon, Jessica Gloe, Joshua Gould, James Gray, Nathan Guilford, Junitta Guzman, Daniel Hirschstein, Windy Ho, Kelly Jin, Matthew Kroll, Kanan Lathia, Arielle Leon, Brian Long, Zoe Maltzer, Naomi Martin, Rachel McCue, Emma Meyerdierks, Thuc Nghi Nguyen, Trangthanh Pham, Christine Rimorin, Augustin Ruiz, Nadiya Shapovalova, Cliff Slaughterbeck, Josef Sulc, Michael Tieu, Amy Torkelson, Herman Tung, Nasmil Valera Cuevas, Katherine Wadhwani, Katelyn Ward, Boaz Levi, Colin Farrell, Carol L. Thompson, Shoaib Mufti, Chelsea M. Pagan, Lauren Kruse, Nick Dee, Susan M. Sunkin, Luke Esposito, Michael J. Hawrylycz, Jack Waters, Lydia Ng, Kimberly A. Smith, Bosiljka Tasic, Xiaowei Zhuang, Hongkui Zeng |
| Organization | Allen Institute for Brain Science |
| Contact Person | Zizhen Yao, Hongkui Zeng |
| Contact E-Mail | zizheny@alleninstitute.org, hongkuiz@alleninstitute.org |
| External Identifier | Zeng_transcriptome_Allen_10x_cells_wholebrain_2023_Analysis |
| Grant Name | NA |
| Consortium | BICCN |
| Data Repository | NeMO |
| Data Repository RRID | RRID:SCR_016152 |
| Data License | NA |
| Data Access | NA |
| Community Standards | NA |
| Study Organism | Mus musculus |
| Protocol ID | NA |
| Parent Identifier | nemo:dat-qg7n1b0 |
This identifier does not have sub-identifiers with "raw" data associated
This identifier does not have sub-identifiers with "analysis" data associated