NeMO Identifier: Project

NeMO ID: nemo:std-5jvcwm1

  • Project Title: DNA methylation profiling of genomic DNA in individual mouse brain cell nuclei (RS1.1)
  • Short Name: ecker_sn_mCseq_proj
  • Program Name: biccn

    • PROJECT METADATA

      Description:

    • Contact:
    • Funding Support:
    • Organizations: Salk Institute for Biological Studies , University of California, Los Angeles , University of California, San Diego
    • Modalities: epigenome , transcriptome , multimodal
    • Techniques: mc-seq2 , 10x chromium 3' v2 sequencing , 10x chromium 3' v3 sequencing , atac-seq , smart-seq v4
    • Licenses: , CC BY 4.0
    • URL Protocol:

    Contributors

    Name Organization ORCID
    Joseph Ecker Salk Institute for Biological Studies 0000-0001-5799-5895
    Hanqing Liu Salk Institute for Biological Studies 0000-0002-5114-6048
    Chongyuan Luo University of California, Los Angeles
    Eran Mukamel University of California, San Diego 0000-0003-3203-9535
    Mike Nunn Salk Institute for Biological Studies

    Published Dataset(s)

    ID Title Journal Vol:Page DOI
    nemo:dat-ch1nqb7
    nemo:dat-vmivr5x

    Documentation

    PLEASE CITE NeMO DATA AS FOLLOWS:

    Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473