NeMO Identifier: Collection

NeMO ID: nemo:col-1w5kt2k

  • Collection Name: Spatial dynamics of brain development and neuroinflammation
  • Short Name: Zhang_Fan_DBiTseq_2025
  • Programs: biccn , sspsygene

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human , house mouse
  • Assays: spatial transcriptome , spatial epigenome; chromatin
  • Anatomical Regions: primary visual cortex (V1, striate cortex, area 17)
  • Modalities: transcriptome , epigenome
  • Techniques: DBiT RNA-seq , DBiT ATAC-seq
  • Specimen Type:
  • Keywords: DBiT-seq
  • Contact: Di Zhang ORCID iD icon
  • Grant Numbers: 1RF1MH128876, 1RM1MH132648
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: restricted

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page
DOI 2025 41193846 Nature 647:213-227

Contributors

Name Organization ORCID
Di Zhang Yale University ORCID iD icon 0000-0001-8466-9868
Leslie A. Rubio Rodríguez-Kirby
Yingxin Lin
Wenqi Wang
Mengyi Song University of California, San Fransisco ORCID iD icon 0000-0002-6112-8521
Li Wang University of California, San Francisco
Lijun Wang
Shigeaki Kanatani
Tony Jimenez-Beristain
Yonglong Dang
Mei Zhong
Petra Kukanja
Shuozhen Bao
Shaohui Wang
Xinyi Lisa Chen
Fu Gao
Dejiang Wang
Hang Xu
Cong Ma
Xing Lou
Yang Liu
Jinmiao Chen
Nenad Sestan Yale University ORCID iD icon 0000-0003-0966-9619
Per Uhlén
Arnold Kriegstein University of California, San Francisco ORCID iD icon 0000-0001-5742-2990
Hongyu Zhao
Gonçalo Castelo-Branco
Rong Fan Yale University

Project(s) this Collection Belongs To

ID Title
nemo:grn-6s45fa2 Highly scalable and sensitive spatial transcriptomic and epigenomic sequencing of brain tissues from human and non-human primate
nemo:prj-z735ddz High-throughput in vivo and in vitro functional and multi-omics screens of neuropsychiatric and neurodevelopmental disorder risk genes

Brain Region(s) of Interest

Name
primary visual cortex (V1, striate cortex, area 17)

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-u6aht1d Spatial dynamics of brain development and neuroinflammation: Mouse_Raw_RNA files Zhang_Fan_DBiTseq_2025_Mouse_Raw_RNA
nemo:col-gir3scm Spatial dynamics of brain development and neuroinflammation: Mouse_Raw_ATAC files Zhang_Fan_DBiTseq_2025_Mouse_Raw_ATAC
nemo:col-m6tqpjm Spatial dynamics of brain development and neuroinflammation: Mouse_Raw_Protein files Zhang_Fan_DBiTseq_2025_Mouse_Raw_Protein
nemo:col-ikp4174 Spatial dynamics of brain development and neuroinflammation: Human_Raw_RNA files Zhang_Fan_DBiTseq_2025_Human_Raw_RNA
nemo:col-um5q98x Spatial dynamics of brain development and neuroinflammation: Human_Raw_ATAC files Zhang_Fan_DBiTseq_2025_Human_Raw_ATAC
nemo:col-xtni8ps Spatial dynamics of brain development and neuroinflammation: Human_Raw_Protein files Zhang_Fan_DBiTseq_2025_Human_Raw_Protein
nemo:col-czxop90 Spatial dynamics of brain development and neuroinflammation: Mouse_Analysis_RNA files Zhang_Fan_DBiTseq_2025_Mouse_Analysis_RNA
nemo:col-f5mz5ad Spatial dynamics of brain development and neuroinflammation: Mouse_Analysis_ATAC files Zhang_Fan_DBiTseq_2025_Mouse_Analysis_ATAC
nemo:col-0cggtum Spatial dynamics of brain development and neuroinflammation: Mouse_Analysis_Protein files Zhang_Fan_DBiTseq_2025_Mouse_Analysis_Protein
nemo:col-9o6dyz1 Spatial dynamics of brain development and neuroinflammation: Human_Analysis_RNA files Zhang_Fan_DBiTseq_2025_Human_Analysis_RNA
nemo:col-ddb6obp Spatial dynamics of brain development and neuroinflammation: Human_Analysis_ATAC files Zhang_Fan_DBiTseq_2025_Human_Analysis_ATAC
nemo:col-xn8e9ps Spatial dynamics of brain development and neuroinflammation: Human_Analysis_Protein files Zhang_Fan_DBiTseq_2025_Human_Analysis_Protein

Documentation