Spatial dynamics of brain development and neuroinflammation: Mouse_Analysis_RNA

Program
biccn
Collection Type
Dynamic
Keywords
DBiT-seq

"Open processed DBiT-based, spatial transcriptomics data from mouse associated with the following publication: Zhang D, Rubio Rodríguez-Kirby LA, Lin Y, et al. Spatial dynamics of brain development and neuroinflammation. Nature. 2025;647(8088):213-227. doi:10.1038/s41586-025-09663-y"

Data citation
No data citation listed
Funding agency
NIMH
Grant numbers
1RF1MH128876
Access
open
License
No license listed

Download URLs

  • Browse HTTP server https://data.nemoarchive.org/biccn/grant/rf1_fan/fan/multimodal/bulk/DBiT_RNAseq/mouse/processed/ 56 files 0.41 GB
    Processed HTTP
  • Download BDBag https://data.nemoarchive.org/publication_release/Zhang_Fan_DBiTseq_2025-bag-2026-04-12/Analysis_bag_1_Zhang_Fan_DBiTseq_2025_Mouse_Analysis_RNA.tgz 56 files 0.41 GB
    Processed BDBag

Anatomical Regions

No anatomical region listed for Spatial dynamics of brain development and neuroinflammation: Mouse_Analysis_RNA collection.

Taxa

house mouse

Projects this collection belongs to

  • nemo:grn-6s45fa2
    Highly scalable and sensitive spatial transcriptomic and epigenomic sequencing of brain tissues from human and non-human primate

Assays, Modalities & Techniques

Assays
spatial transcriptome
Modalities
multimodal
Techniques
DBiT RNA-seq

Child collections

No child collections listed for Spatial dynamics of brain development and neuroinflammation: Mouse_Analysis_RNA collection.

Parent collections

  • nemo:col-1w5kt2k
    Spatial dynamics of brain development and neuroinflammation
    files

Associated publications

No publications linked yet.

URL Protocols

No protocol URLs listed for this collection.

Contributors

  • Di Zhang Yale University 0000-0001-8466-9868
  • Leslie A. Rubio Rodríguez-Kirby No affiliation listed
  • Yingxin Lin No affiliation listed
  • Wenqi Wang No affiliation listed
Show 24 more contributors
  • Mengyi Song University of California, San Fransisco 0000-0002-6112-8521
  • Li Wang University of California, San Francisco
  • Lijun Wang No affiliation listed
  • Shigeaki Kanatani No affiliation listed
  • Tony Jimenez-Beristain No affiliation listed
  • Yonglong Dang No affiliation listed
  • Mei Zhong No affiliation listed
  • Petra Kukanja No affiliation listed
  • Shuozhen Bao No affiliation listed
  • Shaohui Wang No affiliation listed
  • Xinyi Lisa Chen No affiliation listed
  • Fu Gao No affiliation listed
  • Dejiang Wang No affiliation listed
  • Hang Xu No affiliation listed
  • Cong Ma No affiliation listed
  • Xing Lou No affiliation listed
  • Yang Liu No affiliation listed
  • Jinmiao Chen No affiliation listed
  • Nenad Sestan Yale University 0000-0003-0966-9619
  • Per Uhlén No affiliation listed
  • Arnold Kriegstein University of California, San Francisco 0000-0001-5742-2990
  • Hongyu Zhao No affiliation listed
  • Gonçalo Castelo-Branco No affiliation listed
  • Rong Fan Yale University

Cross-archive links

No cross-archive links listed for this collection.

Documentation & resources