Identifier Results
| Field | Value |
|---|---|
| Identifier | nemo:col-rmf5gdy |
| Short Name | zeng_10Xv3.1_mouse_cells |
| Title | Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1) |
| Description | As part of the BRAIN Initiative Cell Atlas Network, single cells from mouse were assayed using 10X chromium 3' v3.1 sequencing. Licensed under CC BY 4. Dataset: Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuan Gao, Jessica Gloe, Jeff Goldy, Junitta Guzman, Windy Ho, Katelyn James, Matthew Jungert, Madhav Kannan, Changkyu Lee, Ruiyang Liu, Rachel McCue, Beagan Nguy, Chelsea M Pagan, Trangthanh Pham, Elliot Phillips, Kimberly A. Smith, Emma D. Thomas, Michael Tieu, Amy Torkelson, Alex Tran, Cindy T. J. van Velthoven, Zizhen Yao, Hongkui Zeng, Paola Arlotta (2024) Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1) [Dataset]. Available from https://assets.nemoarchive.org/col-rmf5gdy. |
| Keywords | NA |
| Access | open |
| License | CC-BY-4.0 |
| Modality | transcriptome |
| Assay | transcriptome |
| Technique | 10x chromium 3' v3.1 sequencing |
| Brain Region | Hypothalamus, Olfactory areas, Isocortex, Midbrain, Thalamus, Cerebellum, Hippocampal formation, Medulla |
| Sub-Specimen | cells |
| BICCN Knowledgebase URL | NA |
| aka | NA |
| Submission Status | in progress |
| Species | mouse |
| NCBI Species Taxon ID | NCBI:txid10090 |
| Contact ORCID | 0000-0002-3142-1970 |
| Protocol URL | https://assets.ctfassets.net/an68im79xiti/1eX2FPdpeCgnCJtw4fj9Hx/7cb84edaa9eca04b607f9193162994de/CG000204_ChromiumNextGEMSingleCell3_v3.1_Rev_D.pdf |
| HTTPS URL | https://data.nemoarchive.org/bican/grant/BICAN_Dev_Mouse/zeng/transcriptome/scell/10x_v3.1/mouse/raw/ |
| BDBag URL | https://data.nemoarchive.org/publication_release/BICAN/U01MH130962/aibs/BICAN_zeng_10Xv3.1_mouse_cells-col-rmf5gdy-2024-09-20.tgz |
| Total Size in Collection (in GB) | 1064.4 |
| Total Files in Collection | 353 |
| Authors | Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuan Gao, Jessica Gloe, Jeff Goldy, Junitta Guzman, Windy Ho, Katelyn James, Matthew Jungert, Madhav Kannan, Changkyu Lee, Ruiyang Liu, Rachel McCue, Beagan Nguy, Chelsea M Pagan, Trangthanh Pham, Elliot Phillips, Kimberly A. Smith, Emma D. Thomas, Michael Tieu, Amy Torkelson, Alex Tran, Cindy T. J. van Velthoven, Zizhen Yao, Hongkui Zeng, Paola Arlotta |
| Organization | Allen Institute for Brain Science |
| Contact Person | Kimberly Smith |
| Grant Name | U01MH130962 |
| Project Name | BICAN Developing Mouse |
| Citation | Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuan Gao, Jessica Gloe, Jeff Goldy, Junitta Guzman, Windy Ho, Katelyn James, Matthew Jungert, Madhav Kannan, Changkyu Lee, Ruiyang Liu, Rachel McCue, Beagan Nguy, Chelsea M Pagan, Trangthanh Pham, Elliot Phillips, Kimberly A. Smith, Emma D. Thomas, Michael Tieu, Amy Torkelson, Alex Tran, Cindy T. J. van Velthoven, Zizhen Yao, Hongkui Zeng, Paola Arlotta (2024) Developing Mouse: RNAseq of single cells from embryonic and postnatal mouse brain (10x v3.1) [Dataset]. Available from https://assets.nemoarchive.org/col-rmf5gdy |
This identifier does not have sub-identifiers with "raw" data associated
This identifier does not have sub-identifiers with "analysis" data associated