NeMO Identifier: Collection

NeMO ID: nemo:col-0qkbvkj

  • Collection Name: Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from opossum brain
  • Short Name: lein_10XMultiome_opossum_nuclei
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: gray short-tailed opossum
  • Assays: multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: neocortex (isocortex)
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords:
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol: Protocol
  • Data Access: open
  • Data License: CC BY 4.0
  • Submission Status: Ongoing

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
neocortex (isocortex)

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-7d9c2ir Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from opossum brain: RNAseq files lein_10XMultiome_opossum_nuclei_rna ongoing
nemo:col-k4b34fg Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from opossum brain: ATACseq files lein_10XMultiome_opossum_nuclei_atac ongoing

Documentation

PLEASE CITE COLLECTION AS FOLLOWS:

Trygve Bakken, Darren Bertagnolli, Anish Bhaswanth Chakka, Rushil Chakrabarty, Nick Dee, Rebecca Ferrer, Aaron Garcia, Jeff Goldy, Junitta Guzman, Madeleine Hewitt, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Danielle L. Jones, Lauren Kruse, Boaz P. Levi, Brian Long, Delissa McMillen, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Jessie Puckett, Matthew Schmitz, Stephanie Seeman, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Jack Waters, Morgan Wirthlin, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from opossum brain [Dataset]. Available from: https://assets.nemoarchive.org/col-0qkbvkj

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473