NeMO Identifier: Collection

NeMO ID: nemo:col-1w5kt2k

  • Collection Name: Spatial dynamics of brain development and neuroinflammation
  • Short Name:
  • Programs: biccn , sspsygene

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human , house mouse
  • Assays: spatial transcriptome , spatial epigenome; chromatin
  • Anatomical Regions:
  • Modalities: transcriptome , epigenome
  • Techniques: DBiT RNA-seq , DBiT ATAC-seq
  • Specimen Type:
  • Keywords: DBiT-seq
  • Contact: Di Zhang
  • Grant Numbers: 1RF1MH128876, 1RM1MH132648
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Contributors

Name Organization ORCID
Arnold Kriegstein University of California, San Francisco 0000-0001-5742-2990
Nenad Sestan Yale University 0000-0003-0966-9619
Li Wang University of California, San Francisco
Rong Fan Yale University
Mengyi Song University of California, San Fransisco 0000-0002-6112-8521
Di Zhang Yale University 0000-0001-8466-9868
Leslie A. Rubio Rodríguez-Kirby
Yingxin Lin
Wenqi Wang
Lijun Wang
Shigeaki Kanatani
Tony Jimenez-Beristain
Yonglong Dang
Mei Zhong
Petra Kukanja
Shuozhen Bao
Shaohui Wang
Xinyi Lisa Chen
Fu Gao
Dejiang Wang
Hang Xu
Cong Ma
Xing Lou
Yang Liu
Jinmiao Chen
Per Uhlén
Hongyu Zhao
Gonçalo Castelo-Branco

Project(s) this Collection Belongs To

ID Title
nemo:grn-6s45fa2 Highly scalable and sensitive spatial transcriptomic and epigenomic sequencing of brain tissues from human and non-human primate
nemo:prj-z735ddz High-throughput in vivo and in vitro functional and multi-omics screens of neuropsychiatric and neurodevelopmental disorder risk genes

Documentation


NeMO Citation:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473