Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from rhesus macaque brain (10X v3.1 CellPlex) (BICAN-2024-09-RR-SCO MetaSnapshot)

Program
bican
Collection Type
Dynamic
Keywords
Rapid Release 2024
Status
Ongoing

As part of the BRAIN Initiative Cell Atlas Network, single nuclei from rhesus monkey were assayed using 10X chromium 3' v3.1 CellPlex sequencing. (BICAN-2024-09-RR-SCO MetaSnapshot)

Data citation
Dataset: Trygve Bakken, Darren Bertagnolli, Anish Bhaswanth Chakka, Rushil Chakrabarty, Nick Dee, Rebecca Ferrer, Aaron Garcia, Jeff Goldy, Junitta Guzman, Madeleine Hewitt, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Danielle L. Jones, Lauren Kruse, Boaz P. Levi, Brian Long, Delissa McMillen, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Jessie Puckett, Matthew Schmitz, Stephanie Seeman, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Jack Waters, Morgan Wirthlin, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from rhesus macaque brain (10X v3.1 CellPlex) [Dataset]. Available from: https://assets.nemoarchive.org/col-2hk6fm0.
Funding agency
NIMH
Grant numbers
UM1MH130981
Access
open
License
CC BY 4.0

Download URLs

  • Download BDBag https://data.nemoarchive.org/publication_release/BICAN/UM1MH130981/aibs/BICAN_lein_10Xv3.1-CellPlex_rhesusmonkey_nuclei-col-2hk6fm0-2024-09-20.tgz 130 files 379.54 GB
    Raw BDBag
  • Browse HTTP server https://data.nemoarchive.org/bican/grant/HMBA/lein/transcriptome/sncell/ 130 files 379.54 GB
    Raw HTTP

Anatomical Regions

  • neocortex (isocortex)

Taxa

rhesus macaque

Projects this collection belongs to

  • nemo:prj-t8d9ty5
    Functionally guided adult whole brain cell atlas in human and NHP

Assays, Modalities & Techniques

Assays
transciptome; cellplex_barcode transciptome; cellplex_RNAseq
Modalities
transcriptome
Techniques
10xV3.1_CellPlex;Barcode 10xV3.1_CellPlex;GEX

Child collections

  • nemo:col-irzdben
    Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from rhesus macaque brain (10X v3.1 CellPlex) (BICAN-2024-09-RR-SCO Snapshot RNA)
  • nemo:col-kdws7vp
    Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from rhesus macaque brain (10X v3.1 CellPlex) (BICAN-2024-09-RR-SCO Snapshot Barcode)

Parent collections

  • nemo:col-jgk1h8n
    Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from rhesus macaque brain (10X v3.1 CellPlex) (MetaCumulative)
    collection

Associated publications

No publications linked yet.

URL Protocols

Contributors

No contributors listed for Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from rhesus macaque brain (10X v3.1 CellPlex) (BICAN-2024-09-RR-SCO MetaSnapshot) collection.

Cross-archive links

No cross-archive links listed for this collection.

Documentation & resources