NeMO Identifier: Collection

NeMO ID: nemo:col-2hk6fm0

  • Collection Name: Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from rhesus macaque brain (10X v3.1 CellPlex)
  • Short Name: lein_10Xv3.1-CellPlex_rhesusmonkey_nuclei
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: rhesus macaque
  • Assays: transciptome; cellplex_barcode , transciptome; cellplex_RNAseq
  • Anatomical Regions: neocortex (isocortex)
  • Modalities: transcriptome
  • Techniques: 10xV3.1_CellPlex;Barcode , 10xV3.1_CellPlex;GEX
  • Specimen Type:
  • Keywords:
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0
  • Submission Status: Ongoing

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
neocortex (isocortex)

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-irzdben Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from rhesus macaque brain (10X v3.1 CellPlex): RNAseq files lein_10Xv3.1-CellPlex_rhesusmonkey_nuclei_rna ongoing
nemo:col-kdws7vp Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from rhesus macaque brain (10X v3.1 CellPlex): barcode files lein_10Xv3.1-CellPlex_rhesusmonkey_nuclei_barcode ongoing

Documentation

PLEASE CITE COLLECTION AS FOLLOWS:

Trygve Bakken, Darren Bertagnolli, Anish Bhaswanth Chakka, Rushil Chakrabarty, Nick Dee, Rebecca Ferrer, Aaron Garcia, Jeff Goldy, Junitta Guzman, Madeleine Hewitt, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Danielle L. Jones, Lauren Kruse, Boaz P. Levi, Brian Long, Delissa McMillen, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Jessie Puckett, Matthew Schmitz, Stephanie Seeman, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Jack Waters, Morgan Wirthlin, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from rhesus macaque brain (10X v3.1 CellPlex) [Dataset]. Available from: https://assets.nemoarchive.org/col-2hk6fm0

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473