Developing Mouse Brain Atlas: RNAseq analysis of single cells from developing mouse brain (10X v4) (BICAN-2024-09-RR-SCO Snapshot)

Program

bican

Collection Type

Dynamic

Specimen Type

cells

Keywords

Rapid Release 2024

Status

Ongoing

As part of the BRAIN Initiative Cell Atlas Network, cells from developing mouse brain were assayed using 10X chromium 3' v4 sequencing. (BICAN-2024-09-RR-SCO Snapshot)

Data citation: Dataset: Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuan Gao, Jessica Gloe, Jeff Goldy, Junitta Guzman, Windy Ho, Katelyn James, Matthew Jungert, Madhav Kannan, Changkyu Lee, Ruiyang Liu, Rachel McCue, Beagan Nguy, Chelsea M Pagan, Trangthanh Pham, Elliot Phillips, Kimberly A. Smith, Emma D. Thomas, Michael Tieu, Amy Torkelson, Alex Tran, Cindy T. J. van Velthoven, Zizhen Yao, Hongkui Zeng, Paola Arlotta (2024) Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10x v4) [Dataset]. Available from: https://assets.nemoarchive.org/col-3h3c02j.
Funding agency: NIMH
Grant numbers: U01MH130962
Access: open
License: CC BY 4.0

Download URLs

Download BDBag https://data.nemoarchive.org/publication_release/BICAN/U01MH130962/aibs/BICAN_zeng_10Xv4_mouse_cells-col-3h3c02j-2024-09-20.tgz 129 files 602.09 GB

Raw BDBag
Browse HTTP server https://data.nemoarchive.org/bican/grant/BICAN_Dev_Mouse/zeng/transcriptome/scell/10x_v4/mouse/raw/ 129 files 602.09 GB

Raw HTTP

Anatomical Regions

Isocortex
Midbrain

Taxa

house mouse

Projects this collection belongs to

nemo:prj-ggc1k9k

Comprehensive single-cell atlas of the developing mouse brain

Assays, Modalities & Techniques

Assays: transcriptome
Modalities: transcriptome
Techniques: 10x Chromium 3' v4 sequencing

Child collections

No child collections listed for Developing Mouse Brain Atlas: RNAseq analysis of single cells from developing mouse brain (10X v4) (BICAN-2024-09-RR-SCO Snapshot) collection.

Parent collections

nemo:col-wb3bmua

Developing Mouse Brain Atlas: RNAseq analysis of single cells from developing mouse brain (10X v4) (Cumulative)
collection

Associated publications

No publications linked yet.

URL Protocols

No protocol URLs listed for this collection.

Contributors

No contributors listed for Developing Mouse Brain Atlas: RNAseq analysis of single cells from developing mouse brain (10X v4) (BICAN-2024-09-RR-SCO Snapshot) collection.

Cross-archive links

No cross-archive links listed for this collection.