Developing Mouse Brain Atlas: Multiome analysis of single nuclei from embryonic and postnatal mouse brain (BICAN-2024-09-RR-SCO Snapshot ATAC)

Program
bican
Collection Type
Dynamic
Specimen Type
nuclei
Keywords
Rapid Release 2024
Status
Ongoing

As part of the BRAIN Initiative Cell Atlas Network, single nuclei from mouse were assayed using the 10X Genomics Multiome platform. (BICAN-2024-09-RR-SCO Snapshot ATAC)

Data citation
Dataset: Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuan Gao, Jessica Gloe, Jeff Goldy, Junitta Guzman, Windy Ho, Katelyn James, Matthew Jungert, Madhav Kannan, Changkyu Lee, Ruiyang Liu, Rachel McCue, Beagan Nguy, Chelsea M Pagan, Trangthanh Pham, Elliot Phillips, Kimberly A. Smith, Emma D. Thomas, Michael Tieu, Amy Torkelson, Alex Tran, Cindy T. J. van Velthoven, Zizhen Yao, Hongkui Zeng, Paola Arlotta (2024) Developing Mouse Brain Atlas: Multiome analysis of single nuclei from embryonic and postnatal mouse brain [Dataset]. Available from https://assets.nemoarchive.org/col-4hjv07d
Funding agency
NIMH
Grant numbers
U01MH130962
Access
open
License
CC BY 4.0

Download URLs

  • Download BDBag https://data.nemoarchive.org/publication_release/BICAN/U01MH130962/aibs/BICAN_zeng_10XMultiome_mouse_nuclei-col-4hjv07d-2024-09-20/col-4hjv07d_bag_2_zeng_10XMultiome_mouse_nuclei_atac-col-5grzfnz-2024-09-20.tgz 5,057 files 20,473.01 GB
    Raw BDBag
  • Browse HTTP server https://data.nemoarchive.org/bican/grant/BICAN_Dev_Mouse/zeng/multimodal/sncell/10xMultiome_ATACseq/mouse/raw/ 5,057 files 20,473.01 GB
    Raw HTTP

Anatomical Regions

  • Hypothalamus
  • Olfactory areas
  • Isocortex
  • Midbrain
  • Thalamus
  • Cerebellum

Taxa

house mouse

Projects this collection belongs to

  • nemo:prj-ggc1k9k
    Comprehensive single-cell atlas of the developing mouse brain

Assays, Modalities & Techniques

Assays
multiome; chromatin
Modalities
multimodal
Techniques
10X genomics multiome;atac-seq

Child collections

No child collections listed for Developing Mouse Brain Atlas: Multiome analysis of single nuclei from embryonic and postnatal mouse brain (BICAN-2024-09-RR-SCO Snapshot ATAC) collection.

Parent collections

  • nemo:col-4hjv07d
    Developing Mouse Brain Atlas: Multiome analysis of single nuclei from embryonic and postnatal mouse brain (BICAN-2024-09-RR-SCO MetaSnapshot)
    files Ongoing

Associated publications

No publications linked yet.

URL Protocols

Contributors

Show 27 more contributors

Cross-archive links

No cross-archive links listed for this collection.

Documentation & resources