NeMO Identifier: Collection

NeMO ID: nemo:col-64xrgxd

  • Collection Name: Developing Mouse Brain Atlas: Multiome analysis of single nuclei from embryonic and postnatal mouse brain: RNAseq
  • Short Name: zeng_10XMultiome_mouse_nuclei_rna
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: house mouse
  • Assays: multiome; transcriptome
  • Anatomical Regions: Hypothalamus , Olfactory areas , Isocortex , Midbrain , Thalamus , Cerebellum , Hippocampal formation , Cortical subplate , Medulla
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;rnaseq
  • Specimen Type: nuclei
  • Keywords:
  • Contact: Kimberly A Smith
  • Grant Numbers: U01MH130962
  • Funding Agency: NIMH
  • URL Protocol: Protocol
  • Data Access: open
  • Data License: CC BY 4.0
  • Submission Status: Ongoing

Contributors

Name Organization ORCID
Paola Arlotta Harvard University 0000-0003-2184-2277
Cindy Van Velthoven Allen Institute 0000-0001-5120-4546
Zizhen Yao Allen Institute 0000-0002-9361-5607
Hongkui Zeng Allen Institute 0000-0002-0326-5878
Changkyu Lee Allen Institute for Brain Science 0000-0001-6146-0404
Kimberly A Smith Allen Institute for Brain Science 0000-0002-3142-1970
Darren Bertagnolli Allen Institute for Brain Science 0000-0002-6626-1567
Tamara Casper Allen Institute for Brain Science 0000-0003-1638-3651
Anish Bhaswanth Chakka Allen Institute for Brain Science 0000-0002-1095-1817
Rushil Chakrabarty Allen Institute for Brain Science 0000-0003-1722-8557
Nick Dee Allen Institute for Brain Science 0000-0002-2831-9254
Matthew Jungert Allen Institute for Brain Science 0009-0007-6600-9250
Madhav Kannan Allen Institute for Brain Science 0009-0006-5104-4355
Jessica Gloe Allen Institute for Brain Science 0000-0001-8343-3423
Jeff Goldy Allen Institute for Brain Science 0000-0001-5140-6922
Junitta Guzman Allen Institute for Brain Science 0000-0001-8217-9232
Windy Ho Allen Institute for Brain Science 0000-0001-6200-9906
Rachel McCue Allen Institute for Brain Science 0000-0003-4339-7581
Beagan Nguy Allen Institute for Brain Science 0000-0001-9577-5260
Chelsea M Pagan Allen Institute for Brain Science 0000-0002-3932-9992
Trangthanh Pham Allen Institute for Brain Science 0000-0002-4738-5062
Elliot Phillips Allen Institute for Brain Science 0009-0008-2762-6608
Amy Torkelson Allen Institute for Brain Science 0000-0002-9465-4202
Alex Tran Allen Institute for Brain Science
Emma D Thomas Allen Institute for Brain Science
Michael Tieu Allen Institute for Brain Science
Michael Clark Allen Institute for Brain Science
Rebecca Ferrer Allen Institute for Brain Science
Yuan Gao Allen Institute for Brain Science
Katelyn James Allen Institute for Brain Science
Ruiyang Liu Allen Institute for Brain Science

Project(s) this Collection Belongs To

ID Title
nemo:prj-ggc1k9k Comprehensive single-cell atlas of the developing mouse brain

Brain Region(s) of Interest

Name
Hypothalamus
Olfactory areas
Isocortex
Midbrain
Thalamus
Cerebellum
Hippocampal formation
Cortical subplate
Medulla

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-4hjv07d Developing Mouse Brain Atlas: Multiome analysis of single nuclei from embryonic and postnatal mouse brain files zeng_10XMultiome_mouse_nuclei ongoing

Documentation

PLEASE CITE COLLECTION AS FOLLOWS:

Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuan Gao, Jessica Gloe, Jeff Goldy, Junitta Guzman, Windy Ho, Katelyn James, Matthew Jungert, Madhav Kannan, Changkyu Lee, Ruiyang Liu, Rachel McCue, Beagan Nguy, Chelsea M Pagan, Trangthanh Pham, Elliot Phillips, Kimberly A. Smith, Emma D. Thomas, Michael Tieu, Amy Torkelson, Alex Tran, Cindy T. J. van Velthoven, Zizhen Yao, Hongkui Zeng, Paola Arlotta (2024) Developing Mouse: Multiome analysis of single nuclei from embryonic and postnatal mouse brain [Dataset]. Available from https://assets.nemoarchive.org/col-64xrgxd

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473