NeMO Identifier: Collection

NeMO ID: nemo:col-fnhiqmx

  • Collection Name: bican__BICAN_Mul_PN_Human__salk_ecker__nuclei__m3C-seq__human__demultiplexed_fastq__open__no_restriction__2026-08-11
  • Short Name: bican__BICAN_Mul_PN_Human__salk_ecker__nuclei__m3C-seq__human__demultiplexed_fastq__open__no_restriction__2026-08-11
  • Programs:

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: human
  • Assays: methylation
  • Anatomical Regions: laterodorsal portion of STH , head of caudate , tail of caudate , substantia innominata , red nucleus , body of caudate , substantia nigra, compact part , shell of nucleus accumbens , core of nucleus accumbens , substantia nigra, reticular part , external segment of globus pallidus , parvocellular division of VA , putamen , lateroventral portion of STH , internal segment of globus pallidus
  • Modalities: epigenome
  • Techniques: m3c-seq
  • Specimen Type: nuclei
  • Keywords:
  • Contact:
  • Grant Numbers:
  • Funding Agency:
  • URL Protocol:
  • Data Access: open

Contributors

Name Organization ORCID
Joseph R Ecker Salk Institute for Biological Studies ORCID iD icon 0000-0001-5799-5895
Maria Margarita Behrens ORCID iD icon 0000-0002-7168-8186
Wubin Ding ORCID iD icon 0000-0002-5355-7561
Amit Klein ORCID iD icon 0000-0002-5898-6592
Cindy Tatiana Báez-Becerra
Jonathan A Rink
Anna Bartlett
Qiurui Zeng Salk Institute for Biological Studies
Ruoxuan Wang
Rosa Gomez Castanon
Joseph Nery Salk Institute for Biological Studies ORCID iD icon 0000-0003-0153-5659
Emma Osgood
William Owens
Alaina Petrella
Chumo Chen
Andrea Saldana Acerbo
Ariana S Barcoma
Jiayi Liu
Kaitlyn G Russo
Kyle W Knutson
Carissa K Young
Jackson K Willier
Cesar Barragan
Jessica Arzavala
Silvia Cho
Jordan Altshul
Derek Chan
Eshaan Soma
Jammy Luo
Manya Jain
Sarah Velazquez
Natalie Schenker-Ahmed
Guha V Sundaram
Austin C Manning
Yareli Sanchez
Aleksandra Bikkina
Shuai Fu
Wei Tian Salk Institute for Biological Studies
Huaming Chen Salk Institute for Biological Studies
Yueyue Wu
Manoj Hariharan
Carolyn O’Connor
Michelle Liem
Mikayla V Marrin
Cynthia Rose
Shane N Alt
Jillian Berry
Wenjin Zhang
Quan Zhu
Rebecca D Hodge
Trygve Bakken Allen Institute ORCID iD icon 0000-0003-3373-7386
Ed S Lein Allen Institute ORCID iD icon 0000-0001-9012-6552
Daofeng Li
Ting Wang Washington University School of Medicine ORCID iD icon 0000-0002-6800-242X
Xiangmin Xu University of California, Irvine ORCID iD icon 0000-0002-5828-1533
Bing Ren University of California, San Diego ORCID iD icon 0000-0002-5435-1127

Brain Region(s) of Interest

Name
laterodorsal portion of STH
head of caudate
tail of caudate
substantia innominata
red nucleus
body of caudate
substantia nigra, compact part
shell of nucleus accumbens
core of nucleus accumbens
substantia nigra, reticular part
external segment of globus pallidus
parvocellular division of VA
putamen
lateroventral portion of STH
internal segment of globus pallidus

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:dat-aw6czix A Multimodal Single-Cell Epigenomic and 3D Genome Atlas of the Human Basal Ganglia files

Documentation