Spinal Cord Atlas: Multiome analysis of single nuclei from developing mouse brain - fastq (BICAN-2026-09-RR-SCO MetaSnapshot)

Program
bican
Collection Type
Static
Keywords
Rapid Release 2026

As part of the BRAIN Initiative Cell Atlas Network, single nuclei from mouse spinal cord were assayed using the 10X Genomics Multiome platform - fastq (BICAN-2026-09-RR-SCO MetaSnapshot)

Data citation
Dataset (fastq): Helen Lai, Carla Rivera Pacheco, Helen Poldsam, Allan-Hermann Pool (2026) Spinal Cord Atlas: Multiome analysis of single nuclei from mouse spinal cord [Dataset - fastq]. Available from: https://assets.nemoarchive.org/nemo:col-j4jxver
Funding agency
NIMH
Grant numbers
R01MH134799
Access
open
License
CCBY4

Download URLs

  • Download BDBag https://data.nemoarchive.org/bdbags/BICAN/BICAN-2026-09-RR-SCO/col-j4jxver__BICAN__MetaSnapshot__2026-09-25__BICAN_Mouse_Spinal_Cord_Atlases__utsouthwestern_lai__nuclei__10X_genomics_multiome__house_mouse__demultiplexed_fastq__open__no_restriction.tgz 5,504 files 15,137.14 GB
    Raw BDBag

Anatomical Regions

  • spinal cord

Taxa

house mouse

Projects this collection belongs to

  • nemo:prj-frwup1c
    Molecular and anatomical atlases from progenitors to adult neurons in the mouse spinal cord

Assays, Modalities & Techniques

Assays
multiome; chromatin multiome; transcriptome
Modalities
multimodal
Techniques
10X genomics multiome;atac-seq 10X genomics multiome;rnaseq

Child collections

  • nemo:col-19imk7b
    Spinal Cord Atlas: Multiome analysis of single nuclei from developing mouse brain - fastq (BICAN-2026-09-RR-SCO Snapshot ATAC)
  • nemo:col-p8zr3gy
    Spinal Cord Atlas: Multiome analysis of single nuclei from developing mouse brain - fastq (BICAN-2026-09-RR-SCO Snapshot RNA)

Parent collections

  • nemo:col-d0gwso7
    Spinal Cord Atlas: Multiome analysis of single nuclei from developing mouse brain - fastq (MetaCumulative)
    collection
  • nemo:col-i17zvqh
    BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-09-RR-SCO)
    collection

Associated publications

No publications linked yet.

URL Protocols

No protocol URLs listed for this collection.

Contributors

No contributors listed for Spinal Cord Atlas: Multiome analysis of single nuclei from developing mouse brain - fastq (BICAN-2026-09-RR-SCO MetaSnapshot) collection.

Cross-archive links

No cross-archive links listed for this collection.

Documentation & resources