NeMO Identifier: Collection

NeMO ID: nemo:col-npe62xg

  • Collection Name: Population variability: Single nucleus RNAseq from postnatal human brain
  • Short Name: mccarroll_10Xv3.1_human_nuclei
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human
  • Assays: transcriptome
  • Anatomical Regions: Basic cell groups and regions , Isocortex
  • Modalities: transcriptome
  • Techniques: 10x chromium 3' v3.1 sequencing
  • Specimen Type: nuclei
  • Keywords:
  • Contact:
  • Grant Numbers: UM1MH130966
  • Funding Agency: NIMH
  • URL Protocol: Protocol
  • Data Access: open
  • Data License: BICAN-BY-NR
  • Submission Status: Ongoing

Project(s) this Collection Belongs To

ID Title
nemo:prj-hqeuy8h An Atlas of Human Brain Cell Variation

Brain Region(s) of Interest

Name
Basic cell groups and regions
Isocortex

Documentation


Data Citation:

Dataset: Kathleen Kim, Lauren Macaisa, Sadie Drouin, Nirmala Rayan, Curtis Mello, Nafiseh Yavari, Olivia Yoo, Alec Wysoker, Khalid Shakir, Jim Nemesh, Seva Kashin, Melissa Goldman, Giulio Genovese, Haley Fritch, Marina Hogan, Katelyn Flowers, Emily Finn, Chuck Vanderburg, Kiku Ichihara, Evan Macosko, Steve McCarroll (2024) Population variability: Single nucleus RNAseq from postnatal human brain [Dataset]. Available from: https://assets.nemoarchive.org/col-npe62xg.

NeMO Citation:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473