• Grant Description:
• The human brain exhibits profound diversity in biological function and vulnerability to disease. Despite the biomedical and cultural importance of int ... The human brain exhibits profound diversity in biological function and vulnerability to disease. Despite the biomedical and cultural importance of inter-individual variation, we know relatively little about its underlying cellular and molecular substrates. In this work we will leverage new technologies in single-cell and spatial genomics to construct an Atlas of Human Brain Cell Variation. We will analyze tens of millions of cells from more than 200 people by single-nucleus RNA-seq and single-nucleus ATAC-seq, and a subset of these by spatial transcriptomics. Analysis of these data will seek to understand: the static versus dynamic molecular and spatial features of each cell type; the ways in which human genetic variation shapes the molecular repertoire of each cell type; and the constellations of cellular and molecular features that co-vary, appearing together in the same brains. We seek especially with this work to understand the functional connections between these phenotypes and: (i) the gene regulatory processes that drive and shape it; (ii) genetic variation associated with brain diseases; and (iii) structural brain variation measured in hundreds of neuroimaging studies. The project will deliver an essential data resource for cellular, molecular, genetic and translational neuroscience – while expanding our understanding of the ways the human brain varies across different people.
• Grant Title: An Atlas of Human Brain Cell Variation
• Grant Short Name: BICAN_PN_Human_Var
• Grant Number: UM1MH130966
• Funding Agency: NIMH

GRANT METADATA

• Assays: transcriptome , spatial transcriptome , multiome; transcriptome , multiome; chromatin , methylation , HT; transcriptome , transciptome; cellplex_barcode , transciptome; cellplex_RNAseq , HT; cellplex_barcode , HT; cellplex_RNAseq , multimodal
• Modalities: transcriptome , multimodal , epigenome
• Techniques: 10x chromium 3' v3.1 sequencing , 10x Chromium 3' v4 sequencing , Slide-tag_10x5Pv2;Spatial , Slide-tag_10x5Pv2;GEX , 10X genomics multiome;rnaseq , 10X genomics multiome;atac-seq , 10x chromium 5' v3 sequencing , Slide-tag std 10x 5' v2 sequencing , PIPSeq T20 3' v4+ , PIPSeq T2 3' v4+ , 10x chromium 5' v5.2 sequencing , m3c-seq , 10xV3.1_HT_CellPlex;Barcode , 10xV3.1_HT , 10xV3.1_HT_CellPlex;GEX , 10xV3.1_CellPlex;Barcode , 10xV3.1_CellPlex;GEX , snmCT-seq , 10x Chromium 3' v4-OCM sequencing
• Contact:

• Using bdbags
• Accessing public data
• Requesting controlled access to private data
• Submitting data to NeMO
• Terms of Use
• Accessing BICAN Rapid Release Inventory
• Citation for NeMO