Single nucleus transcriptomic and epigenomic profiling of mouse locus coeruleus norepinephrine neurons

Program

bican

Collection Type

Dynamic

Multiomic atlas of Mus musculus locus coeruleus norepinephrine neurons generated using 10X Genomics Multiome sequencing of microdissected locus coeruleus (LC) and sub-coeruleus. This dataset is part of spatio-molecular profiling of locus coeruleus and sub-coeruleus norepinephrine neuronal populations and contains expression data from neighboring peri-LC populations

Data citation: No data citation listed
Funding agency: NIMH
Grant numbers: R01MH134833
Access: open
License: CC BY 4.0

Download URLs

Browse HTTP server https://data.nemoarchive.org/bican/grant/BICAN_Neuromodulation/aibs/multimodal/nuclei/10xMultiome_ATACseq/house_mouse/demultiplexed_fastq/

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Browse HTTP server https://data.nemoarchive.org/bican/grant/BICAN_Neuromodulation/aibs/multimodal/nuclei/10xMultiome_RNAseq/house_mouse/demultiplexed_fastq/

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Anatomical Regions

No anatomical region listed for Single nucleus transcriptomic and epigenomic profiling of mouse locus coeruleus norepinephrine neurons collection.

Taxa

house mouse

Projects this collection belongs to

nemo:prj-pv9uoga

Structure-function cell atlas for norepinephrine and serotonin neurons
nemo:prj-uy7joas

LC-NE and DR-5-HT structure and function

Assays, Modalities & Techniques

Assays: multiome; chromatin multiome; transcriptome
Modalities: transcriptome epigenome
Techniques: 10x genomics multiome

Child collections

No child collections listed for Single nucleus transcriptomic and epigenomic profiling of mouse locus coeruleus norepinephrine neurons collection.

Parent collections

No parent collections listed for Single nucleus transcriptomic and epigenomic profiling of mouse locus coeruleus norepinephrine neurons collection.

Associated publications

No publications linked yet.

URL Protocols

No protocol URLs listed for this collection.

Contributors

Zhixiao Su Allen Institute, Neural Dynamics 0000-0002-0138-7433
Polina Kosillo Allen Institute, Neural Dynamics 0000-0002-1944-9460
Kanghoon Jung Allen Institute, Neural Dynamics 0000-0002-5381-5161
Shuonan Chen Allen Institute, Neural Dynamics 0000-0002-2673-3558

Show 23 more contributors

Mathew Summers Allen Institute, Neural Dynamics 0009-0002-3409-7384
Alex Piet Allen Institute, Neural Dynamics 0000-0002-6529-1414
Han Hou Allen Institute, Neural Dynamics 0000-0002-4590-7891
Drew Friedmann Allen Institute, Neural Dynamics 0000-0002-2138-8177
Kenta Hagihara Allen Institute, Neural Dynamics 0000-0003-0064-0852
Peter Grotz Allen Institute, Neural Dynamics 0009-0001-4610-4759
Ella Hilton-VanOsdall Allen Institute, Neural Dynamics 0009-0000-0325-9470
Margaret Lee Allen Institute, Neural Dynamics 0009-0002-1245-5363
John Rohde Allen Institute, Neural Dynamics
Joshua Siegle Allen Institute, Neural Dynamics 0000-0002-7736-4844
Mara Rue Allen Institute, Brain Science 0000-0002-4305-7838
Xiaoyin Chen Allen Institute, Brain Science 0000-0002-2807-6125
Brian Lee Allen Institute, Brain Science 0000-0002-3210-5638
Karel Svoboda Allen Institute, Neural Dynamics 0000-0002-6670-7362
Yoh Isogai Allen Institute, Neural Dynamics 0000-0001-7285-1603
Jayaram Chandrashekar Allen Institute, Neural Dynamics 0000-0001-6412-0114
Jeremiah Cohen Allen Institute, Neural Dynamics 0000-0002-4768-7124
Carolyn Eng Allen Institute, Neural Dynamics 0000-0002-1081-6463
Kimberly A Smith Allen Institute, Brain Science 0000-0002-3142-1970
Nicholas Dee Allen Institute, Brain Science 0000-0002-2831-9254
Olivia Ho-Shing Allen Institute, Neural Dynamics 0009-0006-5525-1829
Sam Tuggle Allen Institute, Neural Dynamics
Holly Myers Allen Institute, Neural Dynamics 0009-0001-2156-6471

Cross-archive links

No cross-archive links listed for this collection.