Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1) (BICAN-2024-09-RR-SCO Snapshot)

Program
bican
Collection Type
Dynamic
Specimen Type
cells
Keywords
Rapid Release 2024
Status
Ongoing

As part of the BRAIN Initiative Cell Atlas Network, single cells from mouse were assayed using 10X chromium 3' v3.1 sequencing. (BICAN-2024-09-RR-SCO Snapshot)

Data citation
Dataset: Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuan Gao, Jessica Gloe, Jeff Goldy, Junitta Guzman, Windy Ho, Katelyn James, Matthew Jungert, Madhav Kannan, Changkyu Lee, Ruiyang Liu, Rachel McCue, Beagan Nguy, Chelsea M Pagan, Trangthanh Pham, Elliot Phillips, Kimberly A. Smith, Emma D. Thomas, Michael Tieu, Amy Torkelson, Alex Tran, Cindy T. J. van Velthoven, Zizhen Yao, Hongkui Zeng, Paola Arlotta (2024) Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10x v3.1) [Dataset]. Available from https://assets.nemoarchive.org/col-rmf5gdy.
Funding agency
NIMH
Grant numbers
U01MH130962
Access
open
License
CC BY 4.0

Download URLs

  • Download BDBag https://data.nemoarchive.org/publication_release/BICAN/U01MH130962/aibs/BICAN_zeng_10Xv3.1_mouse_cells-col-rmf5gdy-2024-09-20.tgz 353 files 1,064.44 GB
    Raw BDBag
  • Browse HTTP server https://data.nemoarchive.org/bican/grant/BICAN_Dev_Mouse/zeng/transcriptome/scell/10x_v3.1/mouse/raw/ 353 files 1,064.44 GB
    Raw HTTP

Anatomical Regions

  • Hypothalamus
  • Olfactory areas
  • Isocortex
  • Midbrain
  • Thalamus
  • Cerebellum

Taxa

house mouse

Projects this collection belongs to

  • nemo:prj-ggc1k9k
    Comprehensive single-cell atlas of the developing mouse brain

Assays, Modalities & Techniques

Assays
transcriptome
Modalities
transcriptome
Techniques
10x chromium 3' v3.1 sequencing

Child collections

No child collections listed for Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1) (BICAN-2024-09-RR-SCO Snapshot) collection.

Parent collections

  • nemo:col-afddrzj
    Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1) (Cumulative)
    collection

Associated publications

No publications linked yet.

URL Protocols

Contributors

Show 27 more contributors

Cross-archive links

No cross-archive links listed for this collection.

Documentation & resources