NeMO Identifier: Collection

NeMO ID: nemo:dat-4wbh9vd

  • Collection Name: Multiscale Spatial Transcriptomic Atlas of Human Basal Ganglia Cell-Type and Cellular Community Organization
  • Short Name:
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human
  • Assays: spatial transcriptome
  • Anatomical Regions: basal ganglia
  • Modalities: multimodal
  • Techniques: Stereo-seq
  • Specimen Type:
  • Keywords: Stereo-seq , Spatial transcriptomics , Human Basal Ganglia , single-cell atlas , transcript topography , cross-species comparison
  • Contact: Xiangmin Xu , Bereket Tesfay Berackey , Zhiqun Tan
  • Grant Numbers: UM1MH130994
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Contributors

Name Organization ORCID
Joseph R Ecker Salk Institute for Biological Studies 0000-0001-5799-5895
Bing Ren University of California, San Diego 0000-0002-5435-1127
Ting Wang Washington University School of Medicine 0000-0002-6800-242X
Xiangmin Xu University of California, Irvine 0000-0002-5828-1533
Jillian Berry
Quan Zhu
Daofeng Li
Maria Margarita Behrens
Bereket Tesfay Berackey 0009-0002-1456-0714
Zhiqun Tan 0000-0002-2235-4577
Ginny Wu
Sujan C Das
Ren Li
Benjamin Esser
Qiao Ye
Mahsa Nafisi
Samuel S Park
Pedro Adolfo Sequeira Mendieta
Firoza Mamdani
Todd C Holmes
Bogdan Bintu

Project(s) this Collection Belongs To

ID Title
nemo:prj-butzji4 Center for Multiomic Human Brain Cell Atlas

Brain Region(s) of Interest

Name
basal ganglia

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-n6b0x7w BICAN Basal Ganglia package collection BICAN Basal Ganglia package ongoing

Documentation


NeMO Citation:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473