NeMO Identifier: Collection

NeMO ID: nemo:dat-cb5kiub

  • Collection Name: Raw data for DNA methylation dataset from the Salk Institute
  • Short Name: BICCN_MOp_DNA_methylation_Salk
  • Programs: biccn

COLLECTION METADATA

  • Description:

  • Raw data associated with the publication 'An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types'

  • Collection Type: Static
  • Taxa: house mouse
  • Assays:
  • Anatomical Regions:
  • Modalities: epigenome
  • Techniques: mc-seq2
  • Specimen Type:
  • Keywords:
  • Contact: Joseph Ecker
  • Grant Numbers:
  • Funding Agency:
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Contributors

Name Organization ORCID
Joseph Ecker Salk Institute for Biological Studies 0000-0001-5799-5895

Project(s) this Collection Belongs To

ID Title
nemo:std-5jvcwm1 DNA methylation profiling of genomic DNA in individual mouse brain cell nuclei (RS1.1)

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:dat-ch1nqb7 A transcriptomic and epigenomic cell atlas of mouse primary motor cortex files

Documentation

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473