A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

Program
biccn
Collection Type
Static

Single-cell transcriptomics of the entire mouse isocortex and hippocampal formation shows shared cellular and circuit organization and large-scale continuous gradients of neuron-type variation that illuminates the underlying relationship between these two critical brain structures.

Data citation
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Funding agency
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Grant numbers
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Access
open
License
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Download URLs

  • Download BDBag https://data.nemoarchive.org/publication_release/Zeng_Transcriptomic_Allen_SMARTer_10X_cells_Cortex_Hippocampus_2021-bag-2024-12-10.tgz 73,529 files 15,180.56 GB
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Anatomical Regions

No anatomical region listed for A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation collection.

Taxa

house mouse

Projects this collection belongs to

  • Transcriptomic cell types in the mouse brain: SMART-seq cells

Assays, Modalities & Techniques

Assays
No assays listed
Modalities
transcriptome
Techniques
10x chromium 3' v2 sequencing Patch_seq_SMARTseq_v4

Child collections

  • A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation: 10X_Analysis
  • A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation: 10X_Raw data
  • A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation: SMARTer_Analysis
  • A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation: SMARTer_Raw data

Parent collections

No parent collections listed for A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation collection.

Associated publications

  • A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation https://doi.org/10.1016/j.cell.2021.04.021

URL Protocols

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Contributors

Cross-archive links

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Documentation & resources