NeMO Identifier: Collection

NeMO ID: nemo:dat-vmivr5x

  • Collection Name: DNA methylation atlas of the mouse brain at single-cell resolution
  • Short Name:
  • Programs: biccn

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: house mouse
  • Assays:
  • Anatomical Regions:
  • Modalities: epigenome
  • Techniques: mc-seq2
  • Specimen Type:
  • Keywords: Epigenomics , DNA methylation , Cellular neuroscience , epigenetics , nervous system
  • Contact: Joseph Ecker
  • Grant Numbers:
  • Funding Agency:
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page
DOI PMID: 34616061

Contributors

Name Organization ORCID
Joseph Ecker Salk Institute for Biological Studies 0000-0001-5799-5895

Project(s) this Collection Belongs To

ID Title
nemo:std-5jvcwm1 DNA methylation profiling of genomic DNA in individual mouse brain cell nuclei (RS1.1)

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:dat-j67i2im DNA methylation atlas of the mouse brain at single-cell resolution: Processed Alignment Data files liu_ecker_sn_mCseq_align
nemo:dat-8x3j29i DNA methylation atlas of the mouse brain at single-cell resolution: Processed Counts Data files liu_ecker_sn_mCseq_counts
nemo:dat-tprd2pd DNA methylation atlas of the mouse brain at single-cell resolution: Raw Data files liu_ecker_sn_mCseq_raw

Documentation

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473