NeMO Identifier: Collection

NeMO ID: nemo:dat-w0t72j5

  • Collection Name: Gene Regulatory Dynamics in Human Brain
  • Short Name:
  • Programs: biccn , bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human
  • Assays: spatial transcriptome , multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: cerebral cortex , Cerebellum , Pons
  • Modalities: multimodal
  • Techniques: droplet paired-tag; DNA , droplet paired-tag; RNA
  • Specimen Type:
  • Keywords: single-cell , histone modifications , H3K27ac , H3K27me3 , H3K9me3 , epigenome , chromatin conformation , single-cell multiomics , deep learning model
  • Contact:
  • Grant Numbers: 1RF1MH128838, UM1MH130994
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page

Contributors

Name Organization ORCID
Trygve Bakken Allen Institute 0000-0003-3373-7386
Joseph R Ecker Salk Institute for Biological Studies 0000-0001-5799-5895
Ed Lein Allen Institute 0000-0001-9012-6552
Sten Linnarsson Karolinska Institute 0000-0002-3491-3444
Bing Ren University of California, San Diego 0000-0002-5435-1127
Zhaoning Wang University of California, San Diego 0000-0002-0290-4746
Margarita Behrens Salk Institute 0000-0002-7168-8186
Ting Wang Washington University School of Medicine 0000-0002-6800-242X
Tamara Casper Allen Institute for Brain Science 0000-0003-1638-3651
Nick Dee Allen Institute for Brain Science 0000-0002-2831-9254
Lei Chang University of California, San Deigo 0000-0002-2606-3347
Yang Xie University of California, San Deigo 0000-0002-7453-6786
Jon Rink
Hannah So Indralingam
Bohan Huang
Nora Emerson
Julia Osteen
Jacinta Lucero
Xiangming Xu
Anna Marie Yanny
Daniel Hirschstein
Rebecca D Hodge
Wubin Ding
Kai Li
Audrey Lie
Keyi Dong
Timothy Loe
Daofeng Li
Ariana S Barcoma
Jackson K Willier
Kyle W Knutson
Kaitlyn G Russo
Jiayi Liu
Silvia Cho
Carissa K Young
Yareli Sanchez
Aleksandra Bikkina
Cesar Barragan
Chumo Chen
William Owens
Carolyn O’Connor
Michelle Liem
Mikayla V Marrin
Cynthia Rose
Shane N Alt
Julie Nyhus
Nadiya Shapovalova
Boaz Levi
C Dirk Keene

Project(s) this Collection Belongs To

ID Title
nemo:grn-f309ksd Ultra-high Throughout Single Cell Multi-omic Analysis of Histone Modifications and Transcriptome in Mouse and Human Brains
nemo:prj-butzji4 Center for Multiomic Human Brain Cell Atlas

Brain Region(s) of Interest

Name
cerebral cortex
Cerebellum
Pons

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-n6b0x7w BICAN Basal Ganglia package collection BICAN Basal Ganglia package ongoing

Documentation