NeMO Identifier: Collection

NeMO ID: nemo:dat-w0t72j5

  • Collection Name: Gene Regulatory Dynamics in Human Brain
  • Short Name:
  • Programs: biccn , bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human
  • Assays: spatial transcriptome , multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: cerebral cortex , Cerebellum , Pons
  • Modalities: multimodal
  • Techniques: droplet paired-tag; DNA , droplet paired-tag; RNA
  • Specimen Type:
  • Keywords: single-cell , histone modifications , H3K27ac , H3K27me3 , H3K9me3 , epigenome , chromatin conformation , single-cell multiomics , deep learning model
  • Contact:
  • Grant Numbers: 1RF1MH128838, UM1MH130994
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page

Contributors

Name Organization ORCID
Trygve Bakken Allen Institute 0000-0003-3373-7386
Joseph R Ecker Salk Institute for Biological Studies 0000-0001-5799-5895
Ed Lein Allen Institute 0000-0001-9012-6552
Sten Linnarsson Karolinska Institute 0000-0002-3491-3444
Bing Ren University of California, San Diego 0000-0002-5435-1127
Zhaoning Wang University of California, San Diego 0000-0002-0290-4746
Margarita Behrens Salk Institute 0000-0002-7168-8186
Ting Wang Washington University School of Medicine 0000-0002-6800-242X
Tamara Casper Allen Institute for Brain Science 0000-0003-1638-3651
Nick Dee Allen Institute for Brain Science 0000-0002-2831-9254
Lei Chang University of California, San Deigo 0000-0002-2606-3347
Yang Xie University of California, San Deigo 0000-0002-7453-6786
Jon Rink
Hannah So Indralingam
Bohan Huang
Nora Emerson
Julia Osteen
Jacinta Lucero
Xiangming Xu
Anna Marie Yanny
Daniel Hirschstein
Rebecca D Hodge
Wubin Ding
Kai Li
Audrey Lie
Keyi Dong
Timothy Loe
Daofeng Li
Ariana S Barcoma
Jackson K Willier
Kyle W Knutson
Kaitlyn G Russo
Jiayi Liu
Silvia Cho
Carissa K Young
Yareli Sanchez
Aleksandra Bikkina
Cesar Barragan
Chumo Chen
William Owens
Carolyn O’Connor
Michelle Liem
Mikayla V Marrin
Cynthia Rose
Shane N Alt
Julie Nyhus
Nadiya Shapovalova
Boaz Levi
C Dirk Keene

Project(s) this Collection Belongs To

ID Title
nemo:grn-f309ksd Ultra-high Throughout Single Cell Multi-omic Analysis of Histone Modifications and Transcriptome in Mouse and Human Brains
nemo:prj-butzji4 Center for Multiomic Human Brain Cell Atlas

Brain Region(s) of Interest

Name
cerebral cortex
Cerebellum
Pons

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-n6b0x7w BICAN Basal Ganglia package collection BICAN Basal Ganglia package ongoing

Documentation


NeMO Citation:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473