Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain (BICAN-2024-09-RR-SCO Snapshot ATAC)

Program
bican
Collection Type
Dynamic
Specimen Type
nuclei
Keywords
Rapid Release 2024
Status
Ongoing

As part of the BRAIN Initiative Cell Atlas Network, single nuclei from humans were assayed using the 10X Genomics Multiome platform. (BICAN-2024-09-RR-SCO Snapshot ATAC)

Data citation
Dataset: Trygve Bakken, Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuanyuan Fu, Aaron Garcia, Jessica Gloe, Jeff Goldy, Junitta Guzman, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Nelson Johansen, Danielle L. Jones, Kathryn Jordan, Matthew Jungert, Madhav Kannan, Inkar Kapen, Lauren Kruse, Changkyu Lee, Boaz P. Levi, Rachel McCue, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Elliot Phillips, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Alex Tran, Jingyi Xie, Zizhen Yao, Dan Yuan, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain [Dataset]. Available from: https://assets.nemoarchive.org/col-dj2jtk5.
Funding agency
NIMH
Grant numbers
UM1MH130981
Access
open
License
BICAN-BY-NR

Download URLs

  • Download BDBag https://data.nemoarchive.org/publication_release/BICAN/UM1MH130981/aibs/BICAN_lein_10XMultiome_human_nuclei-col-dj2jtk5-2024-09-20/col-dj2jtk5_bag_2_lein_10XMultiome_human_nuclei_atac-col-0i1g63m-2024-09-20.tgz 6,049 files 24,308.09 GB
    Raw BDBag
  • Browse HTTP server https://data.nemoarchive.org/bican/grant/HMBA/lein/multimodal/sncell/10xMultiome_ATACseq/human/raw/ 6,049 files 24,308.09 GB
    Raw HTTP

Anatomical Regions

  • Pons
  • basal nuclei (basal ganglia)
  • midbrain (mesencephalon)
  • myelencephalon (medulla oblongata)
  • paleocortex (semicortex)
  • Hypothalamus

Taxa

human

Projects this collection belongs to

  • nemo:prj-t8d9ty5
    Functionally guided adult whole brain cell atlas in human and NHP

Assays, Modalities & Techniques

Assays
multiome; chromatin
Modalities
multimodal
Techniques
10X genomics multiome;atac-seq

Child collections

No child collections listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain (BICAN-2024-09-RR-SCO Snapshot ATAC) collection.

Parent collections

  • nemo:col-dj2jtk5
    Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain (BICAN-2024-09-RR-SCO MetaSnapshot)
    files Ongoing

Associated publications

No publications linked yet.

URL Protocols

Contributors

No contributors listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain (BICAN-2024-09-RR-SCO Snapshot ATAC) collection.

Cross-archive links

No cross-archive links listed for this collection.

Documentation & resources