NeMO Identifier: Collection

NeMO ID: nemo:col-0i1g63m

  • Collection Name: Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain: ATACseq
  • Short Name: lein_10XMultiome_human_nuclei_atac
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human
  • Assays: multiome; chromatin
  • Anatomical Regions: Pons , basal nuclei (basal ganglia) , midbrain (mesencephalon) , myelencephalon (medulla oblongata) , paleocortex (semicortex) , Hypothalamus , Thalamus
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq
  • Specimen Type: nuclei
  • Keywords:
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol: Protocol
  • Data Access: open
  • Data License: BICAN-BY-NR
  • Submission Status: Ongoing

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
Pons
basal nuclei (basal ganglia)
midbrain (mesencephalon)
myelencephalon (medulla oblongata)
paleocortex (semicortex)
Hypothalamus
Thalamus

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-dj2jtk5 Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain files lein_10XMultiome_human_nuclei ongoing

Documentation


Data Citation:

Dataset: Trygve Bakken, Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuanyuan Fu, Aaron Garcia, Jessica Gloe, Jeff Goldy, Junitta Guzman, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Nelson Johansen, Danielle L. Jones, Kathryn Jordan, Matthew Jungert, Madhav Kannan, Inkar Kapen, Lauren Kruse, Changkyu Lee, Boaz P. Levi, Rachel McCue, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Elliot Phillips, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Alex Tran, Jingyi Xie, Zizhen Yao, Dan Yuan, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain [Dataset]. Available from: https://assets.nemoarchive.org/col-dj2jtk5.