NeMO Identifier: Collection

NeMO ID: nemo:col-dj2jtk5

  • Collection Name: Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain
  • Short Name: lein_10XMultiome_human_nuclei
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human
  • Assays: multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: Pons , basal nuclei (basal ganglia) , midbrain (mesencephalon) , myelencephalon (medulla oblongata) , paleocortex (semicortex) , Hypothalamus , Thalamus
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords:
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol: Protocol
  • Data Access: open
  • Data License: BICAN-BY-NR
  • Submission Status: Ongoing

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
Pons
basal nuclei (basal ganglia)
midbrain (mesencephalon)
myelencephalon (medulla oblongata)
paleocortex (semicortex)
Hypothalamus
Thalamus

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-e3oeri2 Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain: RNAseq files lein_10XMultiome_human_nuclei_rna ongoing
nemo:col-0i1g63m Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain: ATACseq files lein_10XMultiome_human_nuclei_atac ongoing

Documentation

PLEASE CITE COLLECTION AS FOLLOWS:

Trygve Bakken, Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuanyuan Fu, Aaron Garcia, Jessica Gloe, Jeff Goldy, Junitta Guzman, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Nelson Johansen, Danielle L. Jones, Kathryn Jordan, Matthew Jungert, Madhav Kannan, Inkar Kapen, Lauren Kruse, Changkye Lee, Boaz P. Levi, Rachel McCue, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Elliot Phillips, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Alex Tran, Jingyi Xie, Zizhen Yao, Dan Yuan, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain [Dataset]. Available from: https://assets.nemoarchive.org/col-dj2jtk5

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473