NeMO Identifier: Collection

NeMO ID: nemo:col-25r5d04

  • Collection Name: BICAN__MetaSnapshot__2025-08-12__HMBA__princeton_lein__nuclei__10X_genomics_multiome__white-tufted-ear_marmoset__demultiplexed_fastq__coh-8boto7m__no_restriction
  • Short Name: BICAN__MetaSnapshot__2025-08-12__HMBA__princeton_lein__nuclei__10X_genomics_multiome__white-tufted-ear_marmoset__demultiplexed_fastq__coh-8boto7m__no_restriction
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: white-tufted-ear marmoset
  • Assays: multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: hippocampal gyrus (formation) , pulvinar of thalamus , Hippocampal region , caudate nucleus , mediodorsal nucleus of thalamus , periaqueductal gray substance , pallidonigral tract , bed nucleus of stria terminalis , hippocampus (hippocampal formation) , substantia nigra , Ventral pallidus , putamen , internal segment of globus pallidus , dorsolateral part of caudate head , head of caudate , tail of caudate , ventral thalamus , dorsal thalamus , Brain stem , globus pallidus , thalamus , superior colliculus , lateral geniculate nucleus , rostral putamen , amygdaloid complex , midbrain reticular formation , lateral septal nucleus , nucleus accumbens , ventromedial part of caudate head , Midbrain
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords:
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
hippocampal gyrus (formation)
pulvinar of thalamus
Hippocampal region
caudate nucleus
mediodorsal nucleus of thalamus
periaqueductal gray substance
pallidonigral tract
bed nucleus of stria terminalis
hippocampus (hippocampal formation)
substantia nigra
Ventral pallidus
putamen
internal segment of globus pallidus
dorsolateral part of caudate head
head of caudate
tail of caudate
ventral thalamus
dorsal thalamus
Brain stem
globus pallidus
thalamus
superior colliculus
lateral geniculate nucleus
rostral putamen
amygdaloid complex
midbrain reticular formation
lateral septal nucleus
nucleus accumbens
ventromedial part of caudate head
Midbrain

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-em73agj BICAN__MetaCumulative__2025-08-12__HMBA__princeton_lein__nuclei__10X_genomics_multiome__white-tufted-ear_marmoset__demultiplexed_fastq__coh-8boto7m__no_restriction collection
nemo:col-gnbwm7e BICAN-2025-09-RR-SCO collection BICAN-2025-09-RR-SCO

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-h982yof BICAN__Snapshot__2025-08-12__HMBA__princeton_lein__nuclei__10xMultiome_RNAseq__white-tufted-ear_marmoset__demultiplexed_fastq__coh-8boto7m__no_restriction files BICAN__Snapshot__2025-08-12__HMBA__princeton_lein__nuclei__10xMultiome_RNAseq__white-tufted-ear_marmoset__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-0nawjis BICAN__Snapshot__2025-08-12__HMBA__princeton_lein__nuclei__10xMultiome_ATACseq__white-tufted-ear_marmoset__demultiplexed_fastq__coh-8boto7m__no_restriction files BICAN__Snapshot__2025-08-12__HMBA__princeton_lein__nuclei__10xMultiome_ATACseq__white-tufted-ear_marmoset__demultiplexed_fastq__coh-8boto7m__no_restriction

Documentation


Data Citation:

Dataset: Lakme Caceres, Shu Dan, Michael DeBerardine, Jessica Feliciano, Kirsten Levandowski, Reilly Nakamoto, Jessica Schembri, Jitendra Sharma, Atsushi Takahashi, Tsephel Thangpey, Ning Wang, Qiangge Zhang, Guoping Feng, Fenna Krienen (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain [Dataset]. Available from: https://assets.nemoarchive.org/col-25r5d04.