NeMO Identifier: Collection

NeMO ID: nemo:col-gnbwm7e

  • Collection Name: BICAN-2025-09-RR-SCO
  • Short Name: BICAN-2025-09-RR-SCO
  • Programs: bican

COLLECTION METADATA

  • Description:

  • BICAN-2025-09-RR-SCO

  • Collection Type: Static
  • Taxa: Ma's night monkey , white-tufted-ear marmoset , nine-banded armadillo , rhesus macaque , pig-tailed macaque , gray short-tailed opossum , house mouse , domestic ferret , chimpanzee , Norway rat , pig , nothern tree shrew , naked mole-rat , gray mouse lemur
  • Assays: transcriptome , multiome; chromatin , multiome; transcriptome , HT; transcriptome , transciptome; cellplex_barcode , transciptome; cellplex_RNAseq , HT; cellplex_barcode , HT; cellplex_RNAseq
  • Anatomical Regions: ventral group of lateral nucleus , Hindbrain , Basic cell groups and regions , Hippocampal formation , Hippocampal region , caudate nucleus , mediodorsal nucleus of thalamus , periaqueductal gray substance , pallidonigral tract , septal nuclei , islands of Calleja , Hypothalamus , hippocampus (hippocampal formation) , lateral nuclear complex of thalamus , hindbrain (rhombencephalon) , Ventral pallidus , substantia nigra , basal nucleus of Meynert , olfactory tubercle , superior temporal gyrus , anterior amygdaloid area , subthalamic nucleus , Olfactory areas , temporal neocortex , insular neocortex , frontal lobe , Cortical subplate , lateral hemisphere, anterior lobe portion , vermis, flocculonodular lobe portion (nodulus) , presubicular cortex (presubiculum) , inferior olive , head of caudate , tail of caudate , basolateral nuclear group , Brain stem , globus pallidus , superior colliculus , thalamus , posteroventral putamen , intralaminar nuclear complex , hypothalamus , prefrontal cortex , Medulla , lateral hemisphere, posterior lobe portion , subicular cortex , rostral putamen , midbrain reticular formation , dentate area (dentate gyrus) , midbrain (mesencephalon) , Midbrain , occipital neocortex , Thalamus , external segment of globus pallidus , body of caudate , pulvinar of thalamus , hippocampal gyrus (formation) , reticular nucleus of thalamus , corticomedial nuclear group , posterior nuclear complex of thalamus , caudal putamen , striatum , bed nucleus of stria terminalis , subiculum , lateral nucleus , subgenual (subcallosal) division of MFC (area 25) , hippocampal proper , paravermis, anterior lobe portion , spinal cord , primary visual cortex (striate cortex, area V1/17) , cerebellar deep nuclei , vermis, anterior lobe portion , putamen , internal segment of globus pallidus , medial geniculate nuclei , posterior group of intralaminar nuclei , dorsolateral part of caudate head , pyramidal part of medulla oblongata , ventral thalamus , anterior nuclear complex of thalamus , dorsal thalamus , Isocortex , Cerebellum , lateral hemisphere, flocculonodular lobe portion , Cerebral nuclei , paravermis, posterior lobe portion , lateral geniculate nucleus , entorhinal cortex , pons , fastigial (medial) nucleus , amygdaloid complex , lateral septal nucleus , central lateral nucleus of the thalamus , medial nuclear complex of thalamus , nucleus accumbens , amygdalohippocampal transition area , dentate (lateral) nucleus , ventromedial part of caudate head , myelencephalon (medulla oblongata) , vermis, posterior lobe portion
  • Modalities: transcriptome , multimodal
  • Techniques: 10x chromium 3' v3.1 sequencing , 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq , 10xV3.1_HT_CellPlex;Barcode , 10xV3.1_HT , 10xV3.1_HT_CellPlex;GEX , 10x Chromium 3' v4 sequencing , 10xV3.1_CellPlex;Barcode , 10xV3.1_CellPlex;GEX , SMARTSeqSC
  • Specimen Type:
  • Keywords:
  • Contact:
  • Grant Numbers: UM1MH130981, U01MH130962
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP
nemo:prj-ggc1k9k Comprehensive single-cell atlas of the developing mouse brain

Brain Region(s) of Interest

Name
ventral group of lateral nucleus
Hindbrain
Basic cell groups and regions
Hippocampal formation
Hippocampal region
caudate nucleus
mediodorsal nucleus of thalamus
periaqueductal gray substance
pallidonigral tract
septal nuclei
islands of Calleja
Hypothalamus
hippocampus (hippocampal formation)
lateral nuclear complex of thalamus
hindbrain (rhombencephalon)
Ventral pallidus
substantia nigra
basal nucleus of Meynert
olfactory tubercle
superior temporal gyrus
anterior amygdaloid area
subthalamic nucleus
Olfactory areas
temporal neocortex
insular neocortex
frontal lobe
Cortical subplate
lateral hemisphere, anterior lobe portion
vermis, flocculonodular lobe portion (nodulus)
presubicular cortex (presubiculum)
inferior olive
head of caudate
tail of caudate
basolateral nuclear group
Brain stem
globus pallidus
superior colliculus
thalamus
posteroventral putamen
intralaminar nuclear complex
hypothalamus
prefrontal cortex
Medulla
lateral hemisphere, posterior lobe portion
subicular cortex
rostral putamen
midbrain reticular formation
dentate area (dentate gyrus)
midbrain (mesencephalon)
Midbrain
occipital neocortex
Thalamus
external segment of globus pallidus
body of caudate
pulvinar of thalamus
hippocampal gyrus (formation)
reticular nucleus of thalamus
corticomedial nuclear group
posterior nuclear complex of thalamus
caudal putamen
striatum
bed nucleus of stria terminalis
subiculum
lateral nucleus
subgenual (subcallosal) division of MFC (area 25)
hippocampal proper
paravermis, anterior lobe portion
spinal cord
primary visual cortex (striate cortex, area V1/17)
cerebellar deep nuclei
vermis, anterior lobe portion
putamen
internal segment of globus pallidus
medial geniculate nuclei
posterior group of intralaminar nuclei
dorsolateral part of caudate head
pyramidal part of medulla oblongata
ventral thalamus
anterior nuclear complex of thalamus
dorsal thalamus
Isocortex
Cerebellum
lateral hemisphere, flocculonodular lobe portion
Cerebral nuclei
paravermis, posterior lobe portion
lateral geniculate nucleus
entorhinal cortex
pons
fastigial (medial) nucleus
amygdaloid complex
lateral septal nucleus
central lateral nucleus of the thalamus
medial nuclear complex of thalamus
nucleus accumbens
amygdalohippocampal transition area
dentate (lateral) nucleus
ventromedial part of caudate head
myelencephalon (medulla oblongata)
vermis, posterior lobe portion

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-hptzcv9 BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__SMARTSeqSC__pig-tailed_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction files BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__SMARTSeqSC__pig-tailed_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-mp8450q BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__SMARTSeqSC__house_mouse__demultiplexed_fastq__coh-8boto7m__no_restriction files BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__SMARTSeqSC__house_mouse__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-68kzrvo BICAN__Snapshot__2025-08-12__BICAN_Dev_Mouse__aibs__cells__10xV3.1_HT__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction files BICAN__Snapshot__2025-08-12__BICAN_Dev_Mouse__aibs__cells__10xV3.1_HT__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction
nemo:col-dxqp6xj BICAN__Snapshot__2025-08-12__BICAN_Dev_Mouse__aibs__cells__10x_v3.1__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction files BICAN__Snapshot__2025-08-12__BICAN_Dev_Mouse__aibs__cells__10x_v3.1__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction
nemo:col-7ywvum9 BICAN__Snapshot__2025-08-12__BICAN_Dev_Mouse__aibs__cells__10x_v4__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction files BICAN__Snapshot__2025-08-12__BICAN_Dev_Mouse__aibs__cells__10x_v4__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction
nemo:col-ynb19oi BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-cxhw5xf BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__Norway_rat__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__Norway_rat__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-zm78c5y BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__gray_short-tailed_opossum__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__gray_short-tailed_opossum__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-ew08g0c BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__chimpanzee__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__chimpanzee__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-xe74qjz BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10xV3.1_HT_CellPlex__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10xV3.1_HT_CellPlex__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-u0dx3tb BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__nine-banded_armadillo__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__nine-banded_armadillo__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-1oj73i0 BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__domestic_ferret__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__domestic_ferret__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-u8sxtko BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__nothern_tree_shrew__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__nothern_tree_shrew__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-7wsnou9 BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__pig__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__pig__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-0nmg00b BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__Mas_night_monkey__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__Mas_night_monkey__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-8shaeh2 BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__pig-tailed_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__pig-tailed_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-25r5d04 BICAN__MetaSnapshot__2025-08-12__HMBA__princeton_lein__nuclei__10X_genomics_multiome__white-tufted-ear_marmoset__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__princeton_lein__nuclei__10X_genomics_multiome__white-tufted-ear_marmoset__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-iywcuxg BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__naked_mole-rat__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__naked_mole-rat__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-u6bscy0 BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10xV3.1_CellPlex__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10xV3.1_CellPlex__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-fupdd3o BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__gray_mouse_lemur__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__gray_mouse_lemur__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-6rm5o3p BICAN__MetaSnapshot__2025-08-12__BICAN_Dev_Mouse__aibs__nuclei__10X_genomics_multiome__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction collection BICAN__MetaSnapshot__2025-08-12__BICAN_Dev_Mouse__aibs__nuclei__10X_genomics_multiome__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction

Documentation

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473