Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2024-09-RR-SCO Snapshot ATAC)

Program

bican

Collection Type

Dynamic

Specimen Type

nuclei

Keywords

Rapid Release 2024

Status

Ongoing

As part of the BRAIN Initiative Cell Atlas Network, single nuclei from white-tufted-ear marmoset brain were assayed by 10X Genomics Multiome platform. (BICAN-2024-09-RR-SCO Snapshot ATAC)

Data citation: Dataset: Lakme Caceres, Shu Dan, Michael DeBerardine, Jessica Feliciano, Kirsten Levandowski, Reilly Nakamoto, Jessica Schembri, Jitendra Sharma, Atsushi Takahashi, Tsephel Thangpey, Ning Wang, Qiangge Zhang, Guoping Feng, Fenna Krienen (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain [Dataset]. Available from: https://assets.nemoarchive.org/col-vdk0cmw.
Funding agency: NIMH
Grant numbers: UM1MH130981
Access: open
License: CC BY 4.0

Download URLs

Download BDBag https://data.nemoarchive.org/publication_release/BICAN/UM1MH130981/princeton_lein/BICAN_krienen_10XMultiome_marmoset_nuclei-col-vdk0cmw-2024-09-21/col-vdk0cmw_bag_2_krienen_10XMultiome_marmoset_nuclei_atac-col-2qdp56h-2024-09-21.tgz 1,953 files 7,122.78 GB

Raw BDBag
Browse HTTP server https://data.nemoarchive.org/bican/grant/HMBA/krienen/multimodal/sncell/10xMultiome_ATACseq/white_tufted_ear_marmoset/raw/ 1,953 files 7,122.78 GB

Raw HTTP

Anatomical Regions

No anatomical region listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2024-09-RR-SCO Snapshot ATAC) collection.

Taxa

white-tufted-ear marmoset

Projects this collection belongs to

nemo:prj-t8d9ty5

Functionally guided adult whole brain cell atlas in human and NHP

Assays, Modalities & Techniques

Assays: multiome; chromatin
Modalities: multimodal
Techniques: 10X genomics multiome;atac-seq

Child collections

No child collections listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2024-09-RR-SCO Snapshot ATAC) collection.

Parent collections

nemo:col-vdk0cmw

Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2024-09-RR-SCO MetaSnapshot)
files Ongoing

Associated publications

No publications linked yet.

URL Protocols

No protocol URLs listed for this collection.

Contributors

No contributors listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2024-09-RR-SCO Snapshot ATAC) collection.

Cross-archive links

No cross-archive links listed for this collection.