Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2024-09-RR-SCO MetaSnapshot)

Program
bican
Collection Type
Dynamic
Keywords
Rapid Release 2024
Status
Ongoing

As part of the BRAIN Initiative Cell Atlas Network, single nuclei from white-tufted-ear marmoset brain were assayed by 10X Genomics Multiome platform. (BICAN-2024-09-RR-SCO MetaSnapshot)

Data citation
Dataset: Lakme Caceres, Shu Dan, Michael DeBerardine, Jessica Feliciano, Kirsten Levandowski, Reilly Nakamoto, Jessica Schembri, Jitendra Sharma, Atsushi Takahashi, Tsephel Thangpey, Ning Wang, Qiangge Zhang, Guoping Feng, Fenna Krienen (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain [Dataset]. Available from: https://assets.nemoarchive.org/col-vdk0cmw.
Funding agency
NIMH
Grant numbers
UM1MH130981
Access
open
License
CC BY 4.0

Download URLs

  • Download BDBag https://data.nemoarchive.org/publication_release/BICAN/UM1MH130981/princeton_lein/BICAN_krienen_10XMultiome_marmoset_nuclei-col-vdk0cmw-2024-09-21.tgz 3,906 files 11,913.81 GB
    Raw BDBag
  • Browse HTTP server https://data.nemoarchive.org/bican/grant/HMBA/krienen/multimodal/sncell/ 3,906 files 11,913.81 GB
    Raw HTTP

Anatomical Regions

No anatomical region listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2024-09-RR-SCO MetaSnapshot) collection.

Taxa

white-tufted-ear marmoset

Projects this collection belongs to

  • nemo:prj-t8d9ty5
    Functionally guided adult whole brain cell atlas in human and NHP

Assays, Modalities & Techniques

Assays
multiome; chromatin multiome; transcriptome
Modalities
multimodal
Techniques
10X genomics multiome;atac-seq 10X genomics multiome;rnaseq

Child collections

  • nemo:col-hfyskoa
    Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2024-09-RR-SCO Snapshot RNA)
  • nemo:col-2qdp56h
    Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2024-09-RR-SCO Snapshot ATAC)

Parent collections

  • nemo:col-cnav2ma
    Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (MetaCumulative)
    collection

Associated publications

No publications linked yet.

URL Protocols

No protocol URLs listed for this collection.

Contributors

No contributors listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2024-09-RR-SCO MetaSnapshot) collection.

Cross-archive links

No cross-archive links listed for this collection.

Documentation & resources