NeMO Identifier: Collection

NeMO ID: nemo:col-3v9uyyq

COLLECTION METADATA

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
medial division of centromedian nucleus of thalamus
reticular nucleus of thalamus
anterior nucleus of pulvinar
caudal division of ventral posterior lateral nucleus
amiculum of the olive
dorsal subdivision of BNSTlc
periventricular nucleus, supraoptic portion
shell of nucleus accumbens
core of nucleus accumbens
bed nucleus of stria terminalis
rostral presubiculum
layer III of piriform cortex
pontine nucleus
pre-Edinger-Westphal nucleus
magnocellular (medial) division of MD
medial (posterior) entorhinal cortex
stratum lacunosum-moleculare of uncal CA1
layer 6 of DLG
nucleus of the field of Forel
limitans nucleus
stratum pyramidale of uncal CA1
rostral division of ventral posterior lateral nucleus
pregeniculate nucleus
rostral subiculum
lateral habenular nucleus
lateral posterior nucleus of thalamus
putamen
internal segment of globus pallidus
anterior hypothalamic nucleus
polyform layer of rostral dentate gyrus
periventricular area of thalamus
lateral dorsal nucleus of thalamus
head of caudate
tail of caudate
stratum lacunosum-moleculare of uncal CA2
caudal division of central lateral nucleus
red nucleus
intermediate division of lateral nucleus
dorsal medial geniculate nucleus
dorsal subdivision of VLC
multiform (lateral) division of MD
posteroventral putamen
stratum pyramidale of rostral CA3
stratum pyramidale of rostral CA1
ventral claustrum
anteroventral nucleus of thalamus
inferior olive, principal nucleus
temporal claustrum
zona incerta
layer III of piriform-entorhinal-amygdaloid area
myelencephalon (medulla oblongata)
midbrain (mesencephalon)
endopiriform nucleus
paraventricular nucleus of hypothalamus
amygdalohippocampal transition area
subparaventricular zone
venrtral subdivision of CoP
parvocellular (central) division of MD
Dorsal claustrum
dorsal (magnocellular) division of basolateral nucleus
external segment of globus pallidus
body of caudate

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-vv7aidi Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain (BICAN-2026-01-RR-SCO MetaSnapshot) collection lein_10XMultiome_human_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot)

Documentation


Data Citation:

Dataset: Trygve Bakken, Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuanyuan Fu, Aaron Garcia, Jessica Gloe, Jeff Goldy, Junitta Guzman, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Nelson Johansen, Danielle L. Jones, Kathryn Jordan, Matthew Jungert, Madhav Kannan, Inkar Kapen, Lauren Kruse, Changkye Lee, Boaz P. Levi, Rachel McCue, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Elliot Phillips, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Alex Tran, Jingyi Xie, Zizhen Yao, Dan Yuan, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain [Dataset]. Available from: https://assets.nemoarchive.org/nemo:col-vv7aidi