NeMO Identifier: Collection

NeMO ID: nemo:col-vv7aidi

COLLECTION METADATA

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
medial division of centromedian nucleus of thalamus
dorsal subdivision of BNSTlc
shell of nucleus accumbens
core of nucleus accumbens
rostral presubiculum
layer III of piriform cortex
pontine nucleus
magnocellular (medial) division of MD
medial (posterior) entorhinal cortex
nucleus of the field of Forel
rostral subiculum
lateral habenular nucleus
head of caudate
tail of caudate
stratum lacunosum-moleculare of uncal CA2
caudal division of central lateral nucleus
red nucleus
intermediate division of lateral nucleus
multiform (lateral) division of MD
stratum pyramidale of rostral CA3
posteroventral putamen
stratum pyramidale of rostral CA1
anteroventral nucleus of thalamus
temporal claustrum
zona incerta
midbrain (mesencephalon)
endopiriform nucleus
subparaventricular zone
venrtral subdivision of CoP
parvocellular (central) division of MD
Dorsal claustrum
external segment of globus pallidus
body of caudate
reticular nucleus of thalamus
anterior nucleus of pulvinar
caudal division of ventral posterior lateral nucleus
amiculum of the olive
periventricular nucleus, supraoptic portion
bed nucleus of stria terminalis
pre-Edinger-Westphal nucleus
stratum lacunosum-moleculare of uncal CA1
layer 6 of DLG
limitans nucleus
stratum pyramidale of uncal CA1
rostral division of ventral posterior lateral nucleus
pregeniculate nucleus
lateral posterior nucleus of thalamus
putamen
internal segment of globus pallidus
anterior hypothalamic nucleus
polyform layer of rostral dentate gyrus
periventricular area of thalamus
lateral dorsal nucleus of thalamus
dorsal medial geniculate nucleus
dorsal subdivision of VLC
ventral claustrum
inferior olive, principal nucleus
layer III of piriform-entorhinal-amygdaloid area
paraventricular nucleus of hypothalamus
amygdalohippocampal transition area
myelencephalon (medulla oblongata)
dorsal (magnocellular) division of basolateral nucleus

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-ckphx51 Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain (MetaCumulative) collection lein_10XMultiome_human_nuclei (MetaCumulative)
nemo:col-ow59b0f BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-01-RR-SCO) collection BICAN-2026-01-RR-SCO

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-cauym9a Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain (BICAN-2026-01-RR-SCO Snapshot ATAC) files lein_10XMultiome_human_nuclei (BICAN-2026-01-RR-SCO Snapshot ATAC)
nemo:col-3v9uyyq Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain (BICAN-2026-01-RR-SCO Snapshot RNA) files lein_10XMultiome_human_nuclei (BICAN-2026-01-RR-SCO Snapshot RNA)

Documentation


Data Citation:

Dataset: Trygve Bakken, Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuanyuan Fu, Aaron Garcia, Jessica Gloe, Jeff Goldy, Junitta Guzman, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Nelson Johansen, Danielle L. Jones, Kathryn Jordan, Matthew Jungert, Madhav Kannan, Inkar Kapen, Lauren Kruse, Changkye Lee, Boaz P. Levi, Rachel McCue, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Elliot Phillips, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Alex Tran, Jingyi Xie, Zizhen Yao, Dan Yuan, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain [Dataset]. Available from: https://assets.nemoarchive.org/nemo:col-vv7aidi