NeMO Identifier: Collection

NeMO ID: nemo:col-7ywvum9

  • Collection Name: BICAN__Snapshot__2025-08-12__BICAN_Dev_Mouse__aibs__cells__10x_v4__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction
  • Short Name: BICAN__Snapshot__2025-08-12__BICAN_Dev_Mouse__aibs__cells__10x_v4__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: house mouse
  • Assays: transcriptome
  • Anatomical Regions: Hindbrain , Hippocampal formation , Cerebral nuclei , Olfactory areas , Isocortex , Cerebellum , Hypothalamus , Midbrain , Thalamus , Cortical subplate
  • Modalities: transcriptome
  • Techniques: 10x Chromium 3' v4 sequencing
  • Specimen Type: cells
  • Keywords:
  • Contact:
  • Grant Numbers: U01MH130962
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-ggc1k9k Comprehensive single-cell atlas of the developing mouse brain

Brain Region(s) of Interest

Name
Hindbrain
Hippocampal formation
Cerebral nuclei
Olfactory areas
Isocortex
Cerebellum
Hypothalamus
Midbrain
Thalamus
Cortical subplate

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-ycjg1k3 BICAN__Cumulative__2025-08-12__BICAN_Dev_Mouse__aibs__cells__10x_v4__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction collection
nemo:col-gnbwm7e BICAN-2025-09-RR-SCO collection BICAN-2025-09-RR-SCO

Documentation


Data Citation:

Dataset: Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuan Gao, Jessica Gloe, Jeff Goldy, Junitta Guzman, Windy Ho, Katelyn James, Matthew Jungert, Madhav Kannan, Changkyu Lee, Ruiyang Liu, Rachel McCue, Beagan Nguy, Chelsea M Pagan, Trangthanh Pham, Elliot Phillips, Kimberly A. Smith, Emma D. Thomas, Michael Tieu, Amy Torkelson, Alex Tran, Cindy T. J. van Velthoven, Zizhen Yao, Hongkui Zeng, Paola Arlotta (2024) Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10x v4) [Dataset]. Available from: https://assets.nemoarchive.org/col-7ywvum9.

NeMO Citation:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473