NeMO Identifier: Collection

NeMO ID: nemo:col-juxhdh7

  • Collection Name: BICAN__MetaCumulative__2025-08-12__BICAN_Dev_Mouse__aibs__nuclei__10X_genomics_multiome__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction
  • Short Name:
  • Programs: bican

COLLECTION METADATA

  • Description:

  • This is a BICAN Cumulative collection that was created as part of the Rapid Release 2025-08-12

  • Collection Type: Dynamic
  • Taxa: house mouse
  • Assays: multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: Hindbrain , Hippocampal formation , Isocortex , Cerebellum , Hypothalamus , Cerebral nuclei , Medulla , Olfactory areas , Midbrain , Thalamus , Cortical subplate
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords:
  • Contact:
  • Grant Numbers: U01MH130962
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-ggc1k9k Comprehensive single-cell atlas of the developing mouse brain

Brain Region(s) of Interest

Name
Hindbrain
Hippocampal formation
Isocortex
Cerebellum
Hypothalamus
Cerebral nuclei
Medulla
Olfactory areas
Midbrain
Thalamus
Cortical subplate

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-4hjv07d Developing Mouse Brain Atlas: Multiome analysis of single nuclei from embryonic and postnatal mouse brain files zeng_10XMultiome_mouse_nuclei ongoing
nemo:col-6rm5o3p BICAN__MetaSnapshot__2025-08-12__BICAN_Dev_Mouse__aibs__nuclei__10X_genomics_multiome__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction collection BICAN__MetaSnapshot__2025-08-12__BICAN_Dev_Mouse__aibs__nuclei__10X_genomics_multiome__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction

Documentation

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473