NeMO Identifier: Collection

NeMO ID: nemo:col-6rm5o3p

  • Collection Name: BICAN__MetaSnapshot__2025-08-12__BICAN_Dev_Mouse__aibs__nuclei__10X_genomics_multiome__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction
  • Short Name: BICAN__MetaSnapshot__2025-08-12__BICAN_Dev_Mouse__aibs__nuclei__10X_genomics_multiome__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: house mouse
  • Assays: multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: Hindbrain , Hippocampal formation , Isocortex , Cerebellum , Hypothalamus , Cerebral nuclei , Medulla , Olfactory areas , Midbrain , Thalamus , Cortical subplate
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords:
  • Contact:
  • Grant Numbers: U01MH130962
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-ggc1k9k Comprehensive single-cell atlas of the developing mouse brain

Brain Region(s) of Interest

Name
Hindbrain
Hippocampal formation
Isocortex
Cerebellum
Hypothalamus
Cerebral nuclei
Medulla
Olfactory areas
Midbrain
Thalamus
Cortical subplate

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-juxhdh7 BICAN__MetaCumulative__2025-08-12__BICAN_Dev_Mouse__aibs__nuclei__10X_genomics_multiome__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction collection
nemo:col-gnbwm7e BICAN-2025-09-RR-SCO collection BICAN-2025-09-RR-SCO

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-2vy3qdf BICAN__Snapshot__2025-08-12__BICAN_Dev_Mouse__aibs__nuclei__10xMultiome_ATACseq__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction files BICAN__Snapshot__2025-08-12__BICAN_Dev_Mouse__aibs__nuclei__10xMultiome_ATACseq__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction
nemo:col-9tw6f58 BICAN__Snapshot__2025-08-12__BICAN_Dev_Mouse__aibs__nuclei__10xMultiome_RNAseq__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction files BICAN__Snapshot__2025-08-12__BICAN_Dev_Mouse__aibs__nuclei__10xMultiome_RNAseq__house_mouse__demultiplexed_fastq__coh-8ex6kd4__no_restriction

Documentation


Data Citation:

Dataset: Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuan Gao, Jessica Gloe, Jeff Goldy, Junitta Guzman, Windy Ho, Katelyn James, Matthew Jungert, Madhav Kannan, Changkyu Lee, Ruiyang Liu, Rachel McCue, Beagan Nguy, Chelsea M Pagan, Trangthanh Pham, Elliot Phillips, Kimberly A. Smith, Emma D. Thomas, Michael Tieu, Amy Torkelson, Alex Tran, Cindy T. J. van Velthoven, Zizhen Yao, Hongkui Zeng, Paola Arlotta (2024) Developing Mouse Brain Atlas: Multiome analysis of single nuclei from embryonic and postnatal mouse brain [Dataset]. Available from https://assets.nemoarchive.org/col-6rm5o3p.

NeMO Citation:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473