Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from mouse brain (10X v3.1 LT) - fastq (BICAN-2026-09-RR-SCO Snapshot)

Program
bican
Collection Type
Static
Specimen Type
nuclei
Keywords
Rapid Release 2026

As part of the BRAIN Initiative Cell Atlas Network, single nuclei from mouse brain were assayed by 10X chromium 3' v3.1 LT sequencing - fastq (BICAN-2026-09-RR-SCO Snapshot)

Data citation
Dataset (fastq): Beagan Nguy, Anish Bhaswanth Chakka, Jeff Goldy, Rushil Chakrabarty, Michael Tieu, Darren Bertagnolli, Kimberly A. Smith, Amy Torkelson, Katelyn James, Junitta Guzman, Rebecca Ferrer, Trangthanh Pham, Nick Dee, Tamara Casper, Michael Clark, Jessica Gloe, Rachel McCue, Windy Ho, Alex Tran, Elliot Phillips, Madhav Kannan, Matthew Jungert, Kathryn Jordan, Rebecca Hodge, Aaron Garcia, Cassandra Sobieski, Boaz P. Levi, Nadiya V. Shapovalova, Daniel Hirschstein, Nicholas Peña, Danielle L. Jones, Lauren Kruse, Inkar Kapen, Dan Yuan, Trygve Bakken, Nelson Johansen, Yuanyuan Fu, Zizhen Yao, Changkyu Lee, Ed Lein, Hongkui Zeng (2026) Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from mouse brain (10X v3.1 LT) [Dataset - fastq]. Available from: https://assets.nemoarchive.org/nemo:col-kg5jw5a
Funding agency
NIMH
Grant numbers
UM1MH130981
Access
open
License
CCBY4

Download URLs

  • Download BDBag https://data.nemoarchive.org/bdbags/BICAN/BICAN-2026-09-RR-SCO/col-kg5jw5a__BICAN__Snapshot__2026-09-25__HMBA__aibs__nuclei__10xV3.1_LT__house_mouse__demultiplexed_fastq__open__no_restriction.tgz 12 files 22.11 GB
    Raw BDBag

Anatomical Regions

  • Medulla

Taxa

house mouse

Projects this collection belongs to

  • nemo:prj-t8d9ty5
    Functionally guided adult whole brain cell atlas in human and NHP

Assays, Modalities & Techniques

Assays
LT; transcriptome
Modalities
transcriptome
Techniques
10xV3.1_LT

Child collections

No child collections listed for Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from mouse brain (10X v3.1 LT) - fastq (BICAN-2026-09-RR-SCO Snapshot) collection.

Parent collections

  • nemo:col-p6gxdux
    Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from mouse brain (10X v3.1 LT) - fastq (Cumulative)
    collection
  • nemo:col-i17zvqh
    BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-09-RR-SCO)
    collection

Associated publications

No publications linked yet.

URL Protocols

No protocol URLs listed for this collection.

Contributors

No contributors listed for Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from mouse brain (10X v3.1 LT) - fastq (BICAN-2026-09-RR-SCO Snapshot) collection.

Cross-archive links

No cross-archive links listed for this collection.

Documentation & resources