NeMO Identifier: Collection

NeMO ID: nemo:col-mp8450q

  • Collection Name: BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__SMARTSeqSC__house_mouse__demultiplexed_fastq__coh-8boto7m__no_restriction
  • Short Name: BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__SMARTSeqSC__house_mouse__demultiplexed_fastq__coh-8boto7m__no_restriction
  • Programs: bican

COLLECTION METADATA

  • Description:

  • This collection contains house mouse demultiplexed_fastq files from the project HMBA. Files in this collection include SMARTSeqSC data from nuclei.

  • Collection Type: Static
  • Taxa: house mouse
  • Assays: transcriptome
  • Anatomical Regions: Basic cell groups and regions
  • Modalities: transcriptome
  • Techniques: SMARTSeqSC
  • Specimen Type: nuclei
  • Keywords:
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
Basic cell groups and regions

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-enfukog BICAN__Cumulative__2025-08-12__HMBA__aibs__nuclei__SMARTSeqSC__house_mouse__demultiplexed_fastq__coh-8boto7m__no_restriction collection
nemo:col-gnbwm7e BICAN-2025-09-RR-SCO collection BICAN-2025-09-RR-SCO

Documentation

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473