Population variability: Single nucleus RNAseq from human brain (10X v4) - fastq (BICAN-2026-09-RR-SCO Snapshot)

Program

bican

Collection Type

Static

Specimen Type

nuclei

Keywords

Rapid Release 2026

As part of the BRAIN Initiative Cell Atlas Network, nuclei from human brain were assayed using 10x Chromium 3' v4 sequencing - fastq (BICAN-2026-09-RR-SCO Snapshot)

Data citation: Dataset (fastq): Kiku Ichihara, Steven McCarroll, Evan Macosko, Steven C. Burger, James Nemesh, Olivia Yoo, Ezra Muratoglu, Charles Vanderburg, Jiayi Yuan, Khalid Shakir, Curtis J. Mello, Nirmala A. Rayan, Julianna Milidantri, Kathleen Kim, Sadie Drouin, Emily Finn, Haoyuan Gao, Nikita Budnik, Melissa Goldman, Haley Fritch, Giulio Genovese, Marina Hogan, Olivia Catalini, Seva Kashin, Nicole Rockweiler, Alec Wysoker, Lauren Macaisa, Lucas Reese, Katelyn Flowers, Andrew W. Kraft, Stephen J Fleming, Madelynn Coe, Riyaan Gunaratne, Liv Spina, Geneva Fischer, Catherine Crombie, Abir Mohsin (2026) Population variability: Single nucleus RNAseq from human brain (10X v4) [Dataset - fastq]. Available from: https://assets.nemoarchive.org/nemo:col-nuv9oy4
Funding agency: NIMH
Grant numbers: UM1MH130966
Access: open
License: BICAN-BY-NR

Download URLs

Download BDBag https://data.nemoarchive.org/bdbags/BICAN/BICAN-2026-09-RR-SCO/col-nuv9oy4__BICAN__Snapshot__2026-09-25__BICAN_PN_Human_Var__broad_mccarroll__nuclei__10x_v4__human__demultiplexed_fastq__open__no_restriction.tgz 5,376 files 40,255.85 GB

Raw BDBag

Anatomical Regions

anterior limb of internal capsule
stratum lacunosum-moleculare of rostral CA2
Purkinje cell layer of VePi
choroid plexus of lateral ventricle
caudal subdivision of medial nucleus
body of cc, intermediate portion
shell of nucleus accumbens
core of nucleus accumbens
dorsolateral prefrontal cortex
ventral subdivision of area 46
medial (posterior) entorhinal cortex
intermediate subdivision of area 20
SG in dorsolateral prefrontal cortex
peri-caudate ependymal and subependymal zone
intermediate subdivision of area 21
primary visual cortex (striate cortex, area V1/17)
putamen
primary motor cortex (area M1, area 4)
internal segment of globus pallidus
dorsal subdivision of A9/46
polyform layer of rostral dentate gyrus
head of caudate
ventral subdivision of A9/46
substantia nigra, compact part
ventral division of MFC (area 24)
stratum pyramidale of rostral CA1
dorsal subdivision of area 46
molecular layer of VePi
dorsorostral division of MFC (area 32)
granular cell layer of VePi
substantia nigra, reticular part
external segment of globus pallidus
white matter of forebrain
body of caudate

Taxa

human

Projects this collection belongs to

nemo:prj-hqeuy8h

An Atlas of Human Brain Cell Variation

Assays, Modalities & Techniques

Assays: transcriptome
Modalities: transcriptome
Techniques: 10x Chromium 3' v4 sequencing

Child collections

No child collections listed for Population variability: Single nucleus RNAseq from human brain (10X v4) - fastq (BICAN-2026-09-RR-SCO Snapshot) collection.

Parent collections

nemo:col-bva1gh6

Population variability: Single nucleus RNAseq from human brain (10X v4) - fastq (Cumulative)
collection
nemo:col-i17zvqh

BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-09-RR-SCO)
collection

Associated publications

No publications linked yet.

URL Protocols

No protocol URLs listed for this collection.

Contributors

No contributors listed for Population variability: Single nucleus RNAseq from human brain (10X v4) - fastq (BICAN-2026-09-RR-SCO Snapshot) collection.

Cross-archive links

No cross-archive links listed for this collection.