Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1) - Arlotta Lab (BICAN-2026-01-RR-SCO Snapshot)

Program
bican
Collection Type
Static
Specimen Type
cells
Keywords
Rapid Release 2026

As part of the BRAIN Initiative Cell Atlas Network, single cells from developing mouse brain were assayed by 10X chromium 3' v3.1 sequencing. These data were collected in the Arlotta lab at Harvard University. (BICAN-2026-01-RR-SCO Snapshot)

Data citation
Dataset: Juliana Brown, Daniela Di Bella, Nalini Oliver, Ashwin Shetty, Vaishnavi Venkat, Paola Arlotta (2026) Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1) - Arlotta Lab [Dataset]. Available from: https://assets.nemoarchive.org/nemo:col-pdu6wff
Funding agency
NIMH
Grant numbers
U01MH130962
Access
open
License
No license listed

Download URLs

  • Download BDBag https://data.nemoarchive.org/bdbags/BICAN/BICAN-2026-01-RR-SCO/col-pdu6wff__BICAN__Snapshot__2026-01-15__BICAN_Dev_Mouse__harvard_arlotta__cells__10x_v3.1__house_mouse__demultiplexed_fastq__open__no_restriction.tgz 1,088 files 2,150.43 GB
    Raw BDBag

Anatomical Regions

  • Hindbrain
  • Hippocampal formation
  • Cerebral nuclei
  • Olfactory areas
  • Isocortex
  • Cerebellum

Taxa

house mouse

Projects this collection belongs to

  • nemo:prj-ggc1k9k
    Comprehensive single-cell atlas of the developing mouse brain

Assays, Modalities & Techniques

Assays
transcriptome
Modalities
transcriptome
Techniques
10x chromium 3' v3.1 sequencing

Child collections

No child collections listed for Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1) - Arlotta Lab (BICAN-2026-01-RR-SCO Snapshot) collection.

Parent collections

  • nemo:col-77n6hha
    Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1) - Arlotta Lab (Cumulative)
    collection
  • nemo:col-ow59b0f
    BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-01-RR-SCO)
    collection

Associated publications

No publications linked yet.

URL Protocols

No protocol URLs listed for this collection.

Contributors

No contributors listed for Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1) - Arlotta Lab (BICAN-2026-01-RR-SCO Snapshot) collection.

Cross-archive links

No cross-archive links listed for this collection.

Documentation & resources