BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-01-RR-SCO)

Program
bican
Collection Type
Static
Keywords
Rapid Release Inventory 2026 BICAN-2026-01-RR-SCO

This is the second public release of post-QC single-cell and single-nucleus transcriptomic and epigenomic data from the BRAIN Initiative Cell Atlas Network. It features data from 7 institutions, totaling 457 donors, 3204 specimens (library aliquots), and 27 data collections. New to this release are collections of multi-modal human data from the Luo lab at the University of California, Los Angeles, developmental mouse data from the Arlotta lab at Harvard University, and multi-modal data from lemur, mole-rat, and pig-tailed macaque from the Allen Institute (Lein). This release also has updates to existing collections including developmental mouse data from the Allen Institute (Zeng) & University of California, San Francisco (Nowakowski), cross-species data from the Allen Institute (Lein), marmoset data from Princeton University (Krienen), as well as multi-modal human data from Broad Institute (McCarroll) and the Salk Institute (Ecker). This release provides metadata and identifiers to integrate information from the Data Catalog with the Neuroanatomy-anchored Information Management Platform for Collaborative BICAN Data Generation (NIMP) and access to sequence data files at the NeMO archive. The data are provided under a CC-BY license for open access data and a BICAN-BY-NR license for controlled access human data.

Data citation
No data citation listed
Funding agency
NIMH
Grant numbers
UM1MH130994, UM1MH130981, UM1MH130966, U01MH130995, U01MH130962
Access
open
License
No license listed

Download URLs

No download URLs listed for this collection.

Anatomical Regions

  • ventral group of lateral nucleus
  • Hindbrain
  • medial division of centromedian nucleus of thalamus
  • Hippocampal formation
  • caudate nucleus
  • mediodorsal nucleus of thalamus

Taxa

Ma's night monkey white-tufted-ear marmoset nine-banded armadillo human rhesus macaque pig-tailed macaque gray short-tailed opossum house mouse domestic ferret chimpanzee Norway rat pig nothern tree shrew naked mole-rat gray mouse lemur

Projects this collection belongs to

Assays, Modalities & Techniques

Assays
transcriptome methylation multiome; chromatin multiome; transcriptome HT; transcriptome transciptome; cellplex_barcode transciptome; cellplex_RNAseq HT; cellplex_barcode HT; cellplex_RNAseq multimodal
Modalities
transcriptome epigenome multimodal
Techniques
10x chromium 3' v3.1 sequencing 10X genomics multiome;atac-seq 10X genomics multiome;rnaseq m3c-seq 10xV3.1_HT_CellPlex;Barcode 10xV3.1_HT 10xV3.1_HT_CellPlex;GEX 10x Chromium 3' v4 sequencing 10xV3.1_CellPlex;Barcode 10xV3.1_CellPlex;GEX snmCT-seq

Child collections

  • nemo:col-4kdzzxw
    Center for Multiomic Brain: Cytosine DNA methylation (mC) analysis of single nuclei from postnatal human brain (BICAN-2026-01-RR-SCO Snapshot)
  • nemo:col-torw6o3
    Population variability: Single nucleus RNAseq from postnatal human brain (BICAN-2026-01-RR-SCO Snapshot)
  • nemo:col-tqreqdu
    Developmental Multiomics: Chromatin Conformation and Cytosine DNA methylation (mC) analysis of single nuclei from human brain (BICAN-2026-01-RR-SCO Snapshot)
  • nemo:col-86wekaq
    Developmental Multiomics: Chromatin Conformation and Cytosine DNA methylation (mC) analysis of single nuclei from human brain (General research use) (BICAN-2026-01-RR-SCO Snapshot)
  • nemo:col-u1qf544
    Developmental Multiomics: Single-nucleus multi-omic DNA methylation and transcriptome sequencing (snmCT-seq) from human brain (General research use) (BICAN-2026-01-RR-SCO Snapshot)
  • nemo:col-pdu6wff
    Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1) - Arlotta Lab (BICAN-2026-01-RR-SCO Snapshot)

Parent collections

No parent collections listed for BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-01-RR-SCO) collection.

Associated publications

No publications linked yet.

URL Protocols

No protocol URLs listed for this collection.

Contributors

No contributors listed for BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-01-RR-SCO) collection.

Cross-archive links

No cross-archive links listed for this collection.

Documentation & resources