NeMO Identifier: Collection
NeMO ID: nemo:col-ow59b0f
COLLECTION METADATA
Project(s) this Collection Belongs To
| ID | Title |
|---|---|
| nemo:prj-butzji4 | Center for Multiomic Human Brain Cell Atlas |
| nemo:prj-t8d9ty5 | Functionally guided adult whole brain cell atlas in human and NHP |
| nemo:prj-hqeuy8h | An Atlas of Human Brain Cell Variation |
| nemo:prj-vwtwc3r | Spatiotemporal epigenomic and chromosomal architectural cell atlas of developing human brains |
| nemo:prj-ggc1k9k | Comprehensive single-cell atlas of the developing mouse brain |
Brain Region(s) of Interest
| Name |
|---|
| ventral group of lateral nucleus |
| Hindbrain |
| medial division of centromedian nucleus of thalamus |
| Hippocampal formation |
| caudate nucleus |
| mediodorsal nucleus of thalamus |
| dorsal subdivision of BNSTlc |
| Hypothalamus |
| shell of nucleus accumbens |
| core of nucleus accumbens |
| hippocampus (hippocampal formation) |
| lateral nuclear complex of thalamus |
| middle temporal gyrus |
| olfactory tubercle |
| medial (posterior) entorhinal cortex |
| temporal neocortex |
| intermediate subdivision of area 21 |
| frontal lobe |
| rostral subiculum |
| medial subdivision of area 10 |
| Cortical subplate |
| lateral hemisphere, anterior lobe portion |
| inferior olive |
| tail of caudate |
| optic chiasm |
| basolateral nuclear group |
| thalamus |
| superior colliculus |
| substantia nigra, compact part |
| intermediate division of lateral nucleus |
| multiform (lateral) division of MD |
| stratum pyramidale of rostral CA3 |
| ventral division of MFC (area 24) |
| intralaminar nuclear complex |
| stratum pyramidale of rostral CA1 |
| anteroventral nucleus of thalamus |
| prefrontal cortex |
| Medulla |
| zona incerta |
| temporal claustrum |
| dorsal (magnocellular) division of basolateral nucleus |
| endopiriform nucleus |
| lateral ganglionic eminence |
| subparaventricular zone |
| Interbrain |
| Midbrain |
| external segment of globus pallidus |
| body of caudate |
| occipitotemporal (fusiform) gyrus, temporal part |
| pulvinar of thalamus |
| anterior nucleus of pulvinar |
| frontal neocortex |
| amiculum of the olive |
| striatum |
| bed nucleus of stria terminalis |
| subiculum |
| substantia nigra, reticular part |
| subgenual (subcallosal) division of MFC (area 25) |
| hippocampal proper |
| laterodorsal portion of STH |
| stratum lacunosum-moleculare of uncal CA1 |
| layer 6 of DLG |
| parabrachial nuclei |
| SG in dorsolateral prefrontal cortex |
| primary visual cortex (striate cortex, area V1/17) |
| pregeniculate nucleus |
| lateral posterior nucleus of thalamus |
| vermis, anterior lobe portion |
| medial geniculate nuclei |
| posterior group of intralaminar nuclei |
| anterior hypothalamic nucleus |
| pyramidal part of medulla oblongata |
| anterior nuclear complex of thalamus |
| Isocortex |
| lateral hemisphere, flocculonodular lobe portion |
| dorsal subdivision of VLC |
| paravermis, posterior lobe portion |
| ventral claustrum |
| lateral geniculate nucleus |
| pons |
| central lateral nucleus of the thalamus |
| lateral (anterior) entorhinal cortex |
| medial nuclear complex of thalamus |
| nucleus accumbens |
| substantia innominata |
| Basic cell groups and regions |
| periaqueductal gray substance |
| septal nuclei |
| islands of Calleja |
| rostral presubiculum |
| layer III of piriform cortex |
| pontine nucleus |
| Ventral pallidus |
| substantia nigra |
| hindbrain (rhombencephalon) |
| magnocellular (medial) division of MD |
| basal nucleus of Meynert |
| superior temporal gyrus |
| anterior amygdaloid area |
| Olfactory areas |
| nucleus of the field of Forel |
| insular neocortex |
| lateral habenular nucleus |
| vermis, flocculonodular lobe portion (nodulus) |
| presubicular cortex (presubiculum) |
| medial ganglionic eminence |
| head of caudate |
| stratum lacunosum-moleculare of uncal CA2 |
| caudal division of central lateral nucleus |
| caudal subdivision of area 21 |
| Brain stem |
| globus pallidus |
| red nucleus |
| posteroventral putamen |
| lateral subdivision of area 10 |
| hypothalamus |
| lateral hemisphere, posterior lobe portion |
| inferior temporal gyrus |
| subicular cortex |
| rostral putamen |
| mammillary body |
| midbrain reticular formation |
| dentate area (dentate gyrus) |
| cingulate neocortex |
| midbrain (mesencephalon) |
| venrtral subdivision of CoP |
| parvocellular (central) division of MD |
| Dorsal claustrum |
| occipital neocortex |
| Thalamus |
| Pontine reticular formation |
| hippocampal gyrus (formation) |
| reticular nucleus of thalamus |
| corticomedial nuclear group |
| posterior nuclear complex of thalamus |
| ventrolateral prefrontal cortex |
| caudal division of ventral posterior lateral nucleus |
| periventricular nucleus, supraoptic portion |
| orbital frontal cortex |
| lateral nucleus |
| dorsolateral prefrontal cortex |
| pre-Edinger-Westphal nucleus |
| paravermis, anterior lobe portion |
| limitans nucleus |
| postcentral gyrus |
| stratum pyramidale of uncal CA1 |
| spinal cord |
| rostral division of ventral posterior lateral nucleus |
| lateral ventricles |
| cerebellar deep nuclei |
| lateral subdivision of area 9 |
| putamen |
| internal segment of globus pallidus |
| polyform layer of rostral dentate gyrus |
| periventricular area of thalamus |
| lateral dorsal nucleus of thalamus |
| Cerebellum |
| dorsal medial geniculate nucleus |
| Cerebral nuclei |
| lateroventral portion of STH |
| Cerebrum |
| brain |
| entorhinal cortex |
| inferior olive, principal nucleus |
| layer III of piriform-entorhinal-amygdaloid area |
| fastigial (medial) nucleus |
| amygdaloid complex |
| lateral septal nucleus |
| medial preoptic area |
| paraventricular nucleus of hypothalamus |
| amygdalohippocampal transition area |
| dentate (lateral) nucleus |
| myelencephalon (medulla oblongata) |
| medial nucleus of pulvinar |
| vermis, posterior lobe portion |
Child Collections
| Collection ID | Name | Type | Short Name | Submission Status |
|---|---|---|---|---|
| nemo:col-4kdzzxw | Center for Multiomic Brain: Cytosine DNA methylation (mC) analysis of single nuclei from postnatal human brain (BICAN-2026-01-RR-SCO Snapshot) | files | ecker_human_m3cseq_nuclei (BICAN-2026-01-RR-SCO Snapshot) | |
| nemo:col-torw6o3 | Population variability: Single nucleus RNAseq from postnatal human brain (BICAN-2026-01-RR-SCO Snapshot) | files | mccarroll_10Xv3.1_human_nuclei (BICAN-2026-01-RR-SCO Snapshot) | |
| nemo:col-tqreqdu | Developmental Multiomics: Chromatin Conformation and Cytosine DNA methylation (mC) analysis of single nuclei from human brain (BICAN-2026-01-RR-SCO Snapshot) | files | luo_m3Cseq_human_nuclei (BICAN-2026-01-RR-SCO Snapshot) | |
| nemo:col-86wekaq | Developmental Multiomics: Chromatin Conformation and Cytosine DNA methylation (mC) analysis of single nuclei from human brain (General research use) (BICAN-2026-01-RR-SCO Snapshot) | files | luo_m3Cseq_human_nuclei_gru (BICAN-2026-01-RR-SCO Snapshot) | |
| nemo:col-u1qf544 | Developmental Multiomics: Single-nucleus multi-omic DNA methylation and transcriptome sequencing (snmCT-seq) from human brain (General research use) (BICAN-2026-01-RR-SCO Snapshot) | files | luo_mCTseq_human_nuclei_gru (BICAN-2026-01-RR-SCO Snapshot) | |
| nemo:col-pdu6wff | Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1) - Arlotta Lab (BICAN-2026-01-RR-SCO Snapshot) | files | arlotta_10Xv3.1_mouse_cells (BICAN-2026-01-RR-SCO Snapshot) | |
| nemo:col-7x7snh7 | Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1) (BICAN-2026-01-RR-SCO Snapshot) | files | zeng_10Xv3.1_mouse_cells (BICAN-2026-01-RR-SCO Snapshot) | |
| nemo:col-a06sk1r | Developing Mouse Brain Atlas: RNAseq analysis of single cells from developing mouse brain (10X v4) (BICAN-2026-01-RR-SCO Snapshot) | files | zeng_10Xv4_mouse_cells (BICAN-2026-01-RR-SCO Snapshot) | |
| nemo:col-9v0xd24 | Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1 HT) (BICAN-2026-01-RR-SCO Snapshot) | files | zeng_10Xv3.1-HT_mouse_cells (BICAN-2026-01-RR-SCO Snapshot) | |
| nemo:col-9m0k00f | Developing Mouse Brain Atlas: RNAseq analysis of single cells from developing mouse brain (10X v3.1) (BICAN-2026-01-RR-SCO Snapshot) | files | nowakowski_10Xv3.1_mouse_cells (BICAN-2026-01-RR-SCO Snapshot) | |
| nemo:col-eavx5o3 | Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | krienen_10XMultiome_marmoset_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-3kyvdj3 | Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | lein_10XMultiome_rhesusmonkey_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-g4ku5ks | Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from pig-tailed macaque brain (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | lein_10XMultiome_macaque_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-vv7aidi | Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | lein_10XMultiome_human_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-gmx43jp | Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rat brain (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | lein_10XMultiome_rat_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-bp5d0b2 | Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from opossum brain (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | lein_10XMultiome_opossum_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-5eysvie | Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from chimpanzee brain (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | lein_10XMultiome_chimpanzee_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-4khddko | Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from nine-banded armadillo brain (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | lein_10XMultiome_armadillo_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-j2fijjs | Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from ferret brain (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | lein_10XMultiome_ferret_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-qb1gjvo | Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from northern tree shrew brain (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | lein_10XMultiome_treeshrew_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-gvakhhj | Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from pig brain (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | lein_10XMultiome_pig_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-a4ze3eo | Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from Ma's night monkey brain (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | lein_10XMultiome_nightmonkey_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-ra0n6x3 | Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from gray mouse lemur brain (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | lein_10XMultiome_lemur_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-kw12hrc | Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from naked mole-rat brain (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | lein_10XMultiome_molerat_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-729fg53 | Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from rhesus macaque brain (10X v3.1 CellPlex) (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | lein_10Xv3.1-CellPlex_rhesusmonkey_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-mnwtcuj | Human and Mammalian Brain Atlas: RNAseq analysis of single nuclei from rhesus macaque brain (10X v3.1 HT CellPlex) (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | lein_10Xv3.1-HT-CellPlex_rhesusmonkey_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) | |
| nemo:col-myr9nn1 | Developing Mouse Brain Atlas: Multiome analysis of single nuclei from embryonic and postnatal mouse brain (BICAN-2026-01-RR-SCO MetaSnapshot) | collection | zeng_10XMultiome_mouse_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot) |