NeMO Identifier: Collection

NeMO ID: nemo:col-pero103

  • Collection Name: Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (BICAN-2024-09-RR-SCO MetaSnapshot)
  • Short Name: lein_10XMultiome_rhesusmonkey_nuclei (BICAN-2024-09-RR-SCO MetaSnapshot)
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: rhesus macaque
  • Assays: multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: hippocampus (hippocampal formation) , neocortex (isocortex) , basal nuclei (basal ganglia) , Pons , Cerebellum , midbrain (mesencephalon) , myelencephalon (medulla oblongata) , paleocortex (semicortex) , Hypothalamus , Thalamus
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords: BICAN , Rapid Release , 2024
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol: Protocol
  • Data Access: open
  • Data License: CC BY 4.0
  • Submission Status: Ongoing

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
hippocampus (hippocampal formation)
neocortex (isocortex)
basal nuclei (basal ganglia)
Pons
Cerebellum
midbrain (mesencephalon)
myelencephalon (medulla oblongata)
paleocortex (semicortex)
Hypothalamus
Thalamus

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-ddp8buz Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (MetaCumulative) collection lein_10XMultiome_rhesusmonkey_nuclei (MetaCumulative)

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-hbuof3s Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (BICAN-2024-09-RR-SCO Snapshot RNA) files lein_10XMultiome_rhesusmonkey_nuclei (BICAN-2024-09-RR-SCO Snapshot RNA) ongoing
nemo:col-fefye55 Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (BICAN-2024-09-RR-SCO Snapshot ATAC) files lein_10XMultiome_rhesusmonkey_nuclei (BICAN-2024-09-RR-SCO Snapshot ATAC) ongoing

Documentation


Data Citation:

Dataset: Trygve Bakken, Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuanyuan Fu, Aaron Garcia, Jessica Gloe, Jeff Goldy, Junitta Guzman, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Nelson Johansen, Danielle L. Jones, Kathryn Jordan, Matthew Jungert, Madhav Kannan, Inkar Kapen, Lauren Kruse, Changkyu Lee, Boaz P. Levi, Rachel McCue, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Elliot Phillips, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Alex Tran, Jingyi Xie, Zizhen Yao, Dan Yuan, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain [Dataset]. Available from: https://assets.nemoarchive.org/col-pero103