Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (BICAN-2024-09-RR-SCO MetaSnapshot)

Program
bican
Collection Type
Dynamic
Keywords
Rapid Release 2024
Status
Ongoing

As part of the BRAIN Initiative Cell Atlas Network, single nuclei from rhesus monkey were assayed using the 10X Genomics Multiome platform. (BICAN-2024-09-RR-SCO MetaSnapshot)

Data citation
Dataset: Trygve Bakken, Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuanyuan Fu, Aaron Garcia, Jessica Gloe, Jeff Goldy, Junitta Guzman, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Nelson Johansen, Danielle L. Jones, Kathryn Jordan, Matthew Jungert, Madhav Kannan, Inkar Kapen, Lauren Kruse, Changkyu Lee, Boaz P. Levi, Rachel McCue, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Elliot Phillips, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Alex Tran, Jingyi Xie, Zizhen Yao, Dan Yuan, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain [Dataset]. Available from: https://assets.nemoarchive.org/col-pero103
Funding agency
NIMH
Grant numbers
UM1MH130981
Access
open
License
CC BY 4.0

Download URLs

  • Download BDBag https://data.nemoarchive.org/publication_release/BICAN/UM1MH130981/aibs/BICAN_lein_10XMultiome_rhesusmonkey_nuclei-col-pero103-2024-09-20.tgz 9,346 files 28,725.67 GB
    Raw BDBag
  • Browse HTTP server https://data.nemoarchive.org/bican/grant/HMBA/lein/multimodal/sncell/ 9,346 files 28,725.67 GB
    Raw HTTP

Anatomical Regions

  • hippocampus (hippocampal formation)
  • neocortex (isocortex)
  • basal nuclei (basal ganglia)
  • Pons
  • Cerebellum
  • midbrain (mesencephalon)

Taxa

rhesus macaque

Projects this collection belongs to

  • nemo:prj-t8d9ty5
    Functionally guided adult whole brain cell atlas in human and NHP

Assays, Modalities & Techniques

Assays
multiome; chromatin multiome; transcriptome
Modalities
multimodal
Techniques
10X genomics multiome;atac-seq 10X genomics multiome;rnaseq

Child collections

  • nemo:col-hbuof3s
    Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (BICAN-2024-09-RR-SCO Snapshot RNA)
  • nemo:col-fefye55
    Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (BICAN-2024-09-RR-SCO Snapshot ATAC)

Parent collections

  • nemo:col-ddp8buz
    Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (MetaCumulative)
    collection

Associated publications

No publications linked yet.

URL Protocols

Contributors

No contributors listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (BICAN-2024-09-RR-SCO MetaSnapshot) collection.

Cross-archive links

No cross-archive links listed for this collection.

Documentation & resources